Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00479
         (475 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal pro...   136   8e-33
AL132860-21|CAB60518.2|  759|Caenorhabditis elegans Hypothetical...    30   0.98 
AF057032-1|AAC13567.1|  759|Caenorhabditis elegans DNA topoisome...    30   0.98 
U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical pr...    29   1.3  
Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z81066-3|CAI46608.1|  363|Caenorhabditis elegans Hypothetical pr...    27   5.2  
U41547-3|AAA83193.2|  145|Caenorhabditis elegans Hypothetical pr...    27   5.2  
U28943-7|AAK68294.1|  315|Caenorhabditis elegans Serpentine rece...    27   6.9  
AL032632-14|CAO82067.1|  504|Caenorhabditis elegans Hypothetical...    27   9.1  
AL032632-13|CAA21587.2|  507|Caenorhabditis elegans Hypothetical...    27   9.1  

>AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 22 protein.
          Length = 130

 Score =  136 bits (329), Expect = 8e-33
 Identities = 65/71 (91%), Positives = 69/71 (97%)
 Frame = +2

Query: 41  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 220
           MVRMNVL+DAL +I+NAEKRGKRQVLIRP SKVIV+FLTVMMKHGYIGEFEIVDDHRAGK
Sbjct: 1   MVRMNVLADALNAINNAEKRGKRQVLIRPASKVIVRFLTVMMKHGYIGEFEIVDDHRAGK 60

Query: 221 IVVNLTGRLNK 253
           IVVNLTGRLNK
Sbjct: 61  IVVNLTGRLNK 71



 Score = 99.1 bits (236), Expect = 1e-21
 Identities = 45/60 (75%), Positives = 53/60 (88%), Gaps = 1/60 (1%)
 Frame = +1

Query: 250 QVGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLEGKILGFFF 426
           +  VISPR ++ +ND+E++TN LLPSRQFGYL+LTTS GIMDHEEARRKHL GKILGFFF
Sbjct: 71  KASVISPRLNIRLNDLEKYTNTLLPSRQFGYLILTTSAGIMDHEEARRKHLGGKILGFFF 130


>AL132860-21|CAB60518.2|  759|Caenorhabditis elegans Hypothetical
           protein Y56A3A.27 protein.
          Length = 759

 Score = 29.9 bits (64), Expect = 0.98
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +2

Query: 11  FATKRD*ILAMVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGY 178
           F T+ D I  M +  + +DA  + H  + + +  + +RP  K+I  FL + +  GY
Sbjct: 490 FLTEADLISLMDKYGIGTDATHAEHIEKIKTREYIGVRPDGKLIPSFLGLALVDGY 545


>AF057032-1|AAC13567.1|  759|Caenorhabditis elegans DNA
           topoisomerase III protein.
          Length = 759

 Score = 29.9 bits (64), Expect = 0.98
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +2

Query: 11  FATKRD*ILAMVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGY 178
           F T+ D I  M +  + +DA  + H  + + +  + +RP  K+I  FL + +  GY
Sbjct: 490 FLTEADLISLMDKYGIGTDATHAEHIEKIKTREYIGVRPDGKLIPSFLGLALVDGY 545


>U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical protein
            F37A4.4 protein.
          Length = 1163

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +2

Query: 53   NVLSDALKSIH--NAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIV 226
            NVL D+++ I+  N  K  KR   I  C+K     L V  + GY    EI+  H A +  
Sbjct: 826  NVLIDSVREINATNLLKAVKRGAYINVCNKYGNTALHVATRRGYQNLVEILIKHGADRSF 885

Query: 227  VN 232
            +N
Sbjct: 886  LN 887


>Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical
           protein F35G12.8 protein.
          Length = 1549

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 170 HGYIGEFEIVDDHRAGKIVVNLTGRLNKLV 259
           HG +G+  ++D    G I  N   RLN L+
Sbjct: 622 HGRLGDLGVIDPKYEGAICTNFGARLNYLI 651


>Z81066-3|CAI46608.1|  363|Caenorhabditis elegans Hypothetical
           protein F17B5.6 protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 9/14 (64%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
 Frame = +3

Query: 324 TTVWL-PSPYNKWW 362
           T +WL P PYN WW
Sbjct: 29  TVIWLIPRPYNYWW 42


>U41547-3|AAA83193.2|  145|Caenorhabditis elegans Hypothetical
           protein F22A3.2 protein.
          Length = 145

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = -1

Query: 253 LV*SACEIYNNLASSVIINDFKLSDVTVLHHHC*KLNDDFGTGPDEDL 110
           +V +A E ++   +  +   F+  +V V +     ++DDFG+ PD+DL
Sbjct: 15  VVLAASESHSGRQNYRVKGAFRCGNVPVKNVQVKLIDDDFGSDPDDDL 62


>U28943-7|AAK68294.1|  315|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 56 protein.
          Length = 315

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
 Frame = +2

Query: 35  LAMVRMN-VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHR 211
           L  VR N  +SD+ K I      G     I P    I   +T  +   Y GE  ++ +H 
Sbjct: 206 LRQVRKNQFMSDSTKEIAIKFIYGLFVQSILPVVSYI-PMVTSYLYSQYTGEEVLISEHL 264

Query: 212 AGKIVVNLTGRLNKLVSFHLVLMFPSTIL 298
                 +L G L+  +SF+ V+ F  TIL
Sbjct: 265 TLG-TNSLPGLLDPFISFYFVMPFRQTIL 292


>AL032632-14|CAO82067.1|  504|Caenorhabditis elegans Hypothetical
           protein Y11D7A.12b protein.
          Length = 504

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 399 KVFSSGFFMVHDATTCCK 346
           KVFS+GFFM  D  + C+
Sbjct: 140 KVFSNGFFMTFDKLSSCQ 157


>AL032632-13|CAA21587.2|  507|Caenorhabditis elegans Hypothetical
           protein Y11D7A.12a protein.
          Length = 507

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 399 KVFSSGFFMVHDATTCCK 346
           KVFS+GFFM  D  + C+
Sbjct: 140 KVFSNGFFMTFDKLSSCQ 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,178,807
Number of Sequences: 27780
Number of extensions: 172451
Number of successful extensions: 361
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)