Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00479
         (475 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy...   122   9e-29
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id...   122   9e-29
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id...   122   9e-29
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy...   121   3e-28
At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC)         115   1e-26
At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB)          74   6e-14
At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE) ri...    73   8e-14
At1g18390.1 68414.m02297 protein kinase family protein contains ...    29   1.6  
At1g76880.1 68414.m08946 trihelix DNA-binding protein, putative ...    27   6.5  

>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
           cytoplasmic ribosomal protein S15a, Arabidopsis
           thaliana, EMBL:ATAF1412
          Length = 130

 Score =  122 bits (295), Expect = 9e-29
 Identities = 57/71 (80%), Positives = 65/71 (91%)
 Frame = +2

Query: 41  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 220
           MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 221 IVVNLTGRLNK 253
           IVV L GRLNK
Sbjct: 61  IVVELNGRLNK 71



 Score = 96.7 bits (230), Expect = 7e-21
 Identities = 44/58 (75%), Positives = 51/58 (87%), Gaps = 1/58 (1%)
 Frame = +1

Query: 256 GVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLEGKILGFFF 426
           GVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++ GK+LGFF+
Sbjct: 73  GVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130


>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
           identical to GB:AAA61608 from [Arabidopsis thaliana]
           (Plant Physiol. 106 (1), 401-402 (1994))
          Length = 130

 Score =  122 bits (295), Expect = 9e-29
 Identities = 57/71 (80%), Positives = 65/71 (91%)
 Frame = +2

Query: 41  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 220
           MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 221 IVVNLTGRLNK 253
           IVV L GRLNK
Sbjct: 61  IVVELNGRLNK 71



 Score = 96.7 bits (230), Expect = 7e-21
 Identities = 44/58 (75%), Positives = 51/58 (87%), Gaps = 1/58 (1%)
 Frame = +1

Query: 256 GVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLEGKILGFFF 426
           GVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++ GK+LGFF+
Sbjct: 73  GVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130


>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
           identical to GB:AAA61608 from [Arabidopsis thaliana]
           (Plant Physiol. 106 (1), 401-402 (1994))
          Length = 130

 Score =  122 bits (295), Expect = 9e-29
 Identities = 57/71 (80%), Positives = 65/71 (91%)
 Frame = +2

Query: 41  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 220
           MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 221 IVVNLTGRLNK 253
           IVV L GRLNK
Sbjct: 61  IVVELNGRLNK 71



 Score = 96.7 bits (230), Expect = 7e-21
 Identities = 44/58 (75%), Positives = 51/58 (87%), Gaps = 1/58 (1%)
 Frame = +1

Query: 256 GVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLEGKILGFFF 426
           GVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++ GK+LGFF+
Sbjct: 73  GVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130


>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
           cytoplasmic ribosomal protein S15a, Arabidopsis
           thaliana, EMBL:ATAF1412
          Length = 130

 Score =  121 bits (291), Expect = 3e-28
 Identities = 56/71 (78%), Positives = 64/71 (90%)
 Frame = +2

Query: 41  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 220
           MVR++VL+D LKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 221 IVVNLTGRLNK 253
           IVV L GRLNK
Sbjct: 61  IVVELNGRLNK 71



 Score = 95.1 bits (226), Expect = 2e-20
 Identities = 43/58 (74%), Positives = 51/58 (87%), Gaps = 1/58 (1%)
 Frame = +1

Query: 256 GVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLEGKILGFFF 426
           GVISPRFDV + +IE WT  LLPSRQFG++VLTTS GIMDHEEARRK++ GK+LGFF+
Sbjct: 73  GVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130


>At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC) 
          Length = 136

 Score =  115 bits (277), Expect = 1e-26
 Identities = 54/70 (77%), Positives = 61/70 (87%)
 Frame = +2

Query: 41  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 220
           MVR +VL+D LKS+ NAEK+GKRQV+IRP SKVI+KFLTVM KHGYI EFE VDDHR+GK
Sbjct: 7   MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 66

Query: 221 IVVNLTGRLN 250
           IVV L GRLN
Sbjct: 67  IVVELNGRLN 76



 Score = 93.1 bits (221), Expect = 9e-20
 Identities = 41/58 (70%), Positives = 51/58 (87%), Gaps = 1/58 (1%)
 Frame = +1

Query: 256 GVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLEGKILGFFF 426
           GVISPR+D+ + +IE WT  LLPSRQFGY+VLTTS GIMDHEEAR+K++ GK+LGFF+
Sbjct: 79  GVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKNVGGKVLGFFY 136


>At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB) 
          Length = 129

 Score = 73.7 bits (173), Expect = 6e-14
 Identities = 33/65 (50%), Positives = 47/65 (72%)
 Frame = +2

Query: 56  VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 235
           +L+DAL++I NAEKRGK  V ++P S V+  FL +M + GYI  F++ D HR G+I V+L
Sbjct: 5   ILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRITVDL 64

Query: 236 TGRLN 250
            GR+N
Sbjct: 65  QGRVN 69



 Score = 60.9 bits (141), Expect = 4e-10
 Identities = 27/52 (51%), Positives = 41/52 (78%), Gaps = 1/52 (1%)
 Frame = +1

Query: 271 RFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLEGKILGFF 423
           R DV  N+I ++T   LP+RQ+GY+V+TT  GI+DHEEA ++++ G++LGFF
Sbjct: 77  RQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNVGGQVLGFF 128


>At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE)
           ribosomal protein S15a - Brassica napus,PIR2:S20945
          Length = 129

 Score = 73.3 bits (172), Expect = 8e-14
 Identities = 32/65 (49%), Positives = 47/65 (72%)
 Frame = +2

Query: 56  VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 235
           +L+DAL++I NAE+RGK  V ++P S V+  FL +M + GYI  F++ D HR G+I V+L
Sbjct: 5   ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDL 64

Query: 236 TGRLN 250
            GR+N
Sbjct: 65  QGRVN 69



 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 27/53 (50%), Positives = 42/53 (79%), Gaps = 1/53 (1%)
 Frame = +1

Query: 271 RFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLEGKILGFFF 426
           R DV   +IE++T   LP+RQ+GY+V+TT  GI+DHEEA ++++ G++LGFF+
Sbjct: 77  RQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVGGQVLGFFY 129


>At1g18390.1 68414.m02297 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 605

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +2

Query: 119 IRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIV 226
           +RPC   +   LT +  +G+  E ++VD +++G +V
Sbjct: 556 LRPCMSHVQDTLTRIQNNGFGSEMDVVDVNKSGPLV 591


>At1g76880.1 68414.m08946 trihelix DNA-binding protein, putative
           similar to DNA-binding protein DF1 [Pisum sativum]
           GI:13646986
          Length = 603

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -2

Query: 264 NDTNLFSLPVRFTTILPAL*SSTI 193
           N++++FS P   TT++P L SS+I
Sbjct: 177 NNSSIFSTPPPVTTVMPTLPSSSI 200


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,719,811
Number of Sequences: 28952
Number of extensions: 163683
Number of successful extensions: 326
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)