Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00476X
(591 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch... 105 4e-24
SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc... 105 6e-24
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 27 1.5
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 27 2.0
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 27 2.7
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi... 25 6.2
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce... 25 8.3
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 25 8.3
>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
L17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 187
Score = 105 bits (253), Expect = 4e-24
Identities = 50/87 (57%), Positives = 58/87 (66%)
Frame = +1
Query: 1 RYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRR 180
RYS P K KARG+ LR HFKN+ E A I M L++A +L NV E K+ +PFRR
Sbjct: 3 RYSAAPALETKCAKARGAYLRTHFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAVPFRR 62
Query: 181 FNGGVGRCAQAKQFGTTQGRWPKKSPN 261
FNGGVGR AQ K+FG TQ RWP KS N
Sbjct: 63 FNGGVGRTAQGKEFGVTQARWPVKSVN 89
Score = 95.9 bits (228), Expect = 4e-21
Identities = 42/74 (56%), Positives = 56/74 (75%)
Frame = +3
Query: 261 FLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVC 440
F LL+NAE+NA+ K LD+D+L+I H+QVN AP RRRTYRAHGR+ Y+SSP HIE+
Sbjct: 90 FFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLSSPSHIEII 149
Query: 441 LSEREDAVARVAPT 482
++E E+AV + T
Sbjct: 150 VAEEEEAVPKANDT 163
>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
L17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 105 bits (251), Expect = 6e-24
Identities = 49/85 (57%), Positives = 57/85 (67%)
Frame = +1
Query: 1 RYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRR 180
RYS P K KARG+ LR HFKN+ E A I M L++A +L NV E K+ +PFRR
Sbjct: 3 RYSASPALETKCAKARGAYLRTHFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPFRR 62
Query: 181 FNGGVGRCAQAKQFGTTQGRWPKKS 255
FNGGVGR AQ K+FG TQ RWP KS
Sbjct: 63 FNGGVGRTAQGKEFGVTQARWPVKS 87
Score = 96.3 bits (229), Expect = 3e-21
Identities = 42/75 (56%), Positives = 57/75 (76%)
Frame = +3
Query: 258 EFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEV 437
+F LL+NAE+NA+ K LD+D+L+I H+QVN AP RRRTYRAHGR+ Y+SSP HIE+
Sbjct: 89 KFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLSSPSHIEI 148
Query: 438 CLSEREDAVARVAPT 482
++E E+AV + T
Sbjct: 149 IVAEEEEAVPKANDT 163
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 27.5 bits (58), Expect = 1.5
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +1
Query: 55 NLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEK-KECI 168
NLRV K T ++ +++ P + RYLK ++E K+C+
Sbjct: 102 NLRVSKKKTSKSDVSMAGFPFFKLDRYLKILVEDLKKCV 140
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 27.1 bits (57), Expect = 2.0
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +2
Query: 344 SGKSRALPTQTYIPCSRS---HQPLHVVSLPHRSMS 442
S K RA +T + ++S HQ +H +S PH S S
Sbjct: 340 SDKERANLNKTMVSINKSINIHQSIHEISCPHHSSS 375
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 232 VLCQTALLEHSDQRRR*SDGMEYTLSFQ 149
++C TA+L+H D RR G+ + L F+
Sbjct: 846 IVCNTAVLDHWDITRRIEYGIAHILCFR 873
>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 25.4 bits (53), Expect = 6.2
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 231 TGSLAQEIAEFLLQLLRNAESNADNKTLDVDRLVIDHIQ 347
TG ++ FLLQ+L + + A N L +DR++ + Q
Sbjct: 80 TGLAPIYLSSFLLQILASKKKIAVNFNLIIDRVLFQNAQ 118
>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 415
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -1
Query: 168 NTLFLFNHVFEVTNSTTERHLSDCHCGL-IC 79
N L F V + T + ++DC CGL +C
Sbjct: 204 NLGILLKKEFRVRHMKTPQQINDCDCGLHVC 234
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +1
Query: 52 SNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKK 159
+N ++ K+ ETA A+RKM + +R L+ + ++K
Sbjct: 73 TNYKILQKSNDETAQAMRKMQDQARLRDLQKIRQQK 108
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,356,017
Number of Sequences: 5004
Number of extensions: 46026
Number of successful extensions: 123
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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