Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00476X
(591 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433... 115 2e-26
08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995... 115 3e-26
02_05_0384 - 28501536-28501777,28502408-28502630 30 1.2
10_08_0168 - 15379897-15380819,15381306-15381894 28 4.8
06_03_0097 - 16607936-16608712,16610114-16610320,16611220-166113... 28 4.8
03_02_0348 + 7709894-7709926,7710516-7710604,7711202-7711277,771... 28 6.4
03_01_0427 + 3296717-3296861,3296966-3297210 28 6.4
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196... 28 6.4
>09_02_0105 -
4337047-4337079,4337175-4337242,4337323-4337425,
4337507-4337737,4339307-4339347,4339437-4339473,
4339603-4339605
Length = 171
Score = 115 bits (277), Expect = 2e-26
Identities = 56/86 (65%), Positives = 66/86 (76%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 RYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRR 180
+YSRE +NP KS KA G +LRVHFKNT ETA AIRK+PL +A RYL++VI K+ IPFRR
Sbjct: 3 KYSREANNPTKSSKAMGRDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPFRR 62
Query: 181 FNGGVGRCAQAK-QFGTTQGRWPKKS 255
+ GGVGR AQAK + QGRWP KS
Sbjct: 63 YCGGVGRTAQAKSRHSNGQGRWPAKS 88
Score = 108 bits (259), Expect = 4e-24
Identities = 50/72 (69%), Positives = 59/72 (81%)
Frame = +3
Query: 255 AEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIE 434
A F+L LL+NAESNA+ K LDVD L + HIQVN+A RRRTYRAHGRINPYMSSPCHIE
Sbjct: 89 ARFILDLLKNAESNAEVKGLDVDTLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIE 148
Query: 435 VCLSEREDAVAR 470
+ LSE+E+ V +
Sbjct: 149 LILSEKEEPVKK 160
>08_02_1361 -
26398987-26399019,26399320-26399387,26399458-26399560,
26399658-26399888,26400791-26400826,26400891-26400931,
26401028-26401064,26401158-26401160
Length = 183
Score = 115 bits (276), Expect = 3e-26
Identities = 54/80 (67%), Positives = 63/80 (78%)
Frame = +3
Query: 255 AEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIE 434
A F+L LL+NAESNAD K LDVD L + HIQVN+A RRRTYRAHGRINPYMSSPCH+E
Sbjct: 101 ARFILDLLKNAESNADVKGLDVDNLFVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHVE 160
Query: 435 VCLSEREDAVARVAPTDDAP 494
+ LSE+E+AV + T AP
Sbjct: 161 LILSEKEEAVKKEPETTIAP 180
Score = 99.5 bits (237), Expect = 2e-21
Identities = 54/98 (55%), Positives = 64/98 (65%), Gaps = 13/98 (13%)
Frame = +1
Query: 1 RYSREPDNPAKSCKARGSNLRVHFK------------NTYETAMAIRKMPLRRAVRYLKN 144
+YS EP NP KS KA G +LRVHFK NT ETA A+RK+PL +A RYL++
Sbjct: 3 KYSTEPSNPTKSAKAMGRDLRVHFKVIVFARFVQCCSNTRETAFALRKLPLVKAKRYLED 62
Query: 145 VIEKKECIPFRRFNGGVGRCAQAK-QFGTTQGRWPKKS 255
VI K+ IPFRR+ GGVGR AQ K + QGRWP KS
Sbjct: 63 VIAHKQAIPFRRYCGGVGRTAQVKSRQSNGQGRWPAKS 100
>02_05_0384 - 28501536-28501777,28502408-28502630
Length = 154
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/93 (21%), Positives = 36/93 (38%)
Frame = +3
Query: 159 RVYSIPSLQRRRWSLCSSKAVWHNTGSLAQEIAEFLLQLLRNAESNADNKTLDVDRLVID 338
+ S+ SL+RRR LCS + N Q ++ F+ L +A K L + +
Sbjct: 62 KALSVASLRRRRPVLCSEISSLINQVIFEQFLSIFVCNLCIHARKQQPQKPLRLSAYAVQ 121
Query: 339 HIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEV 437
+ + Y ++ P S H+ +
Sbjct: 122 RKETTATTKTQYTCYLKRNKLRPSNSLQVHVPI 154
>10_08_0168 - 15379897-15380819,15381306-15381894
Length = 503
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -3
Query: 313 KVLLSAFDSAFLNNCKRNSAI--SWASDPVLCQTALLEHSDQRR 188
+VL +AFL +C NS + +WA P+LC L + RR
Sbjct: 378 EVLAHPAVAAFLTHCGWNSILESAWAGVPMLCFPLLTDQFTNRR 421
>06_03_0097 - 16607936-16608712,16610114-16610320,16611220-16611336,
16611409-16611690,16611811-16612294,16612791-16612929,
16613138-16613243,16613396-16613562,16613632-16613707,
16614173-16614321,16614813-16614874,16615232-16615335,
16616856-16616950,16617046-16617136,16617785-16617922
Length = 997
Score = 28.3 bits (60), Expect = 4.8
Identities = 22/73 (30%), Positives = 30/73 (41%)
Frame = +2
Query: 332 HRPHSGKSRALPTQTYIPCSRSHQPLHVVSLPHRSMSQRTRRCCRQGSPY**CPSEEKAS 511
HR +SR+ QT S S HRS +R+R R G+P E S
Sbjct: 865 HRAEKSRSRSSHRQTQSGSLDSDS----TSDQHRSRERRSRHKIRSGTPGSDSSIEHHRS 920
Query: 512 KKKLARQKEKMMR 550
KK+ + K + R
Sbjct: 921 KKRKSHSKHRTRR 933
>03_02_0348 +
7709894-7709926,7710516-7710604,7711202-7711277,
7712019-7712214,7712449-7712832,7712884-7714804,
7714906-7714966,7715952-7716371
Length = 1059
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 180 LQRRRWSLCSSKAVWHNTGSLAQEIAEFLLQLLRNAESNADNKT 311
LQ R SL S++ +N G++ I L + A+S+ D+KT
Sbjct: 569 LQSRISSLLDSESPQNNAGNILDSIRNILKDIEDEADSSNDSKT 612
>03_01_0427 + 3296717-3296861,3296966-3297210
Length = 129
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -2
Query: 269 QEEFGDFLGQRPCVVPNCFA*AQRPTPPL 183
Q GD PCV+PNC A A R P L
Sbjct: 81 QMHVGDQASFLPCVIPNCKASAARLCPLL 109
>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
20319770-20319887,20320607-20320676,20320774-20320854,
20320924-20320959,20321129-20321149,20321586-20321642,
20321716-20321827,20321905-20322178,20322454-20322556,
20323244-20323459,20324615-20324665,20325339-20327963
Length = 1440
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +3
Query: 237 SLAQEIAEFLLQLLRNAE--SNADNKTLDVDRLVIDHIQVNRAPCLR 371
+L + EF Q+ + +E S + + L + + I H+ + APCLR
Sbjct: 1030 ALRKSKEEFFCQVYKGSEACSIENTRRLSIQNVSIQHLSGSSAPCLR 1076
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,155,091
Number of Sequences: 37544
Number of extensions: 332261
Number of successful extensions: 929
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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