Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00476X
         (591 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48345| Best HMM Match : Ribosomal_L22 (HMM E-Value=0)              126   2e-29
SB_33276| Best HMM Match : Glyco_transf_43 (HMM E-Value=0)             28   5.0  
SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_52240| Best HMM Match : DUF1700 (HMM E-Value=4.1)                   28   6.6  

>SB_48345| Best HMM Match : Ribosomal_L22 (HMM E-Value=0)
          Length = 142

 Score =  126 bits (303), Expect = 2e-29
 Identities = 57/87 (65%), Positives = 71/87 (81%), Gaps = 2/87 (2%)
 Frame = +1

Query: 1   RYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRR 180
           RY+ +P+NP KSCKARGSNLRVH+KNT+E AMAI+ M +R+A RYLK+V  KK+ +PFR+
Sbjct: 3   RYATDPENPTKSCKARGSNLRVHYKNTHEAAMAIKGMHVRKANRYLKDVCAKKQLVPFRK 62

Query: 181 FNGGVGRCAQAKQFGT--TQGRWPKKS 255
           +NGGVGR AQAK      +QGRWPKKS
Sbjct: 63  YNGGVGRKAQAKNLKVPGSQGRWPKKS 89



 Score = 85.0 bits (201), Expect = 4e-17
 Identities = 40/57 (70%), Positives = 47/57 (82%)
 Frame = +3

Query: 234 GSLAQEIAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRIN 404
           G   ++ AE LLQLL+NAESNA+ K LDVD LV++HIQVN AP +RRRTYRAHGRIN
Sbjct: 83  GRWPKKSAEILLQLLKNAESNAEFKGLDVDSLVVEHIQVNEAPSMRRRTYRAHGRIN 139


>SB_33276| Best HMM Match : Glyco_transf_43 (HMM E-Value=0)
          Length = 1182

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +3

Query: 228 NTGSLAQEIAEFLLQLLRNAESNADNKTLDVDRLVIDHIQV 350
           N   +++ +A++ + +L + E N     LD+D  + DH  V
Sbjct: 828 NLEKISRRVADYKVNILNDPEDNKKLLVLDIDYTLFDHRSV 868


>SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1190

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -1

Query: 387 HGMYVCVGRARDLPECGR*LACQRPKFCC-QRLIQRSSITARGIRRFLG 244
           H   VCV R        R L  ++ +FCC QR +     T   + RFLG
Sbjct: 598 HPNNVCVQRTGSKTLEYRRLTAKQSRFCCQQRKVHFKPYTGARVSRFLG 646


>SB_52240| Best HMM Match : DUF1700 (HMM E-Value=4.1)
          Length = 254

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +3

Query: 231 TGSLAQEIAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPY 410
           T +L +   E L      A  + D  T   +   +DH+  ++   + R  YR    +NP 
Sbjct: 22  TSALTECYHEALCMSYNEAPVSDDGLTFPCELNAVDHVVEDKL--VPRAGYRYCSFMNPC 79

Query: 411 MSSPC 425
           +SSPC
Sbjct: 80  VSSPC 84


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,604,777
Number of Sequences: 59808
Number of extensions: 382447
Number of successful extensions: 1098
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)