Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00476X
         (591 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...   132   2e-31
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...   116   1e-26
AF022971-12|AAG23974.3|  229|Caenorhabditis elegans Hypothetical...    29   1.9  
U41028-4|AAA82357.1|  455|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical pr...    28   4.3  
AF016657-14|AAB93663.3|  495|Caenorhabditis elegans Hypothetical...    27   10.0 

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score =  132 bits (319), Expect = 2e-31
 Identities = 59/84 (70%), Positives = 69/84 (82%)
 Frame = +1

Query: 4   YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 183
           YSR P+N  KSCKARGS+LRVHFKNT+E AMA+R MPLRRA  +L +V E KE +PFRRF
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65

Query: 184 NGGVGRCAQAKQFGTTQGRWPKKS 255
           +GG+GR AQ KQ+ TTQGRWP KS
Sbjct: 66  HGGIGRAAQTKQWNTTQGRWPVKS 89



 Score =  124 bits (299), Expect = 5e-29
 Identities = 62/91 (68%), Positives = 72/91 (79%), Gaps = 1/91 (1%)
 Frame = +3

Query: 222 WHNT-GSLAQEIAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGR 398
           W+ T G    + A+FLL LL+NAESNA+ K LDVD LVI+HI V RA  LRRRTYRAHGR
Sbjct: 78  WNTTQGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGR 137

Query: 399 INPYMSSPCHIEVCLSEREDAVARVAPTDDA 491
           INPYMSSPCHIEV L+E+ED V++  PTDDA
Sbjct: 138 INPYMSSPCHIEVILAEKEDVVSK--PTDDA 166


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score =  116 bits (280), Expect = 1e-26
 Identities = 59/84 (70%), Positives = 67/84 (79%), Gaps = 2/84 (2%)
 Frame = +3

Query: 246 QEIAEF--LLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSS 419
           +EI  F   L LL+NAESNA+ K LDVD LVI+HI V RA  LRRRTYRAHGRINPYMSS
Sbjct: 57  KEIVPFRRFLDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSS 116

Query: 420 PCHIEVCLSEREDAVARVAPTDDA 491
           PCHIEV L+E+ED V++  PTDDA
Sbjct: 117 PCHIEVILAEKEDVVSK--PTDDA 138



 Score = 93.1 bits (221), Expect = 1e-19
 Identities = 42/60 (70%), Positives = 49/60 (81%)
 Frame = +1

Query: 4   YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 183
           YSR P+N  KSCKARGS+LRVHFKNT+E AMA+R MPLRRA  +L +V E KE +PFRRF
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65


>AF022971-12|AAG23974.3|  229|Caenorhabditis elegans Hypothetical
           protein C31B8.1 protein.
          Length = 229

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 590 LIV*IFYLTLMSIPSSSSPFDAQAFSWKLFLRWGI 486
           +I  + +L  M+I  S SPF A   + KLF+ +G+
Sbjct: 2   MIAILMFLKTMAITRSKSPFKASPSNQKLFISFGV 36


>U41028-4|AAA82357.1|  455|Caenorhabditis elegans Hypothetical
           protein C25G6.5 protein.
          Length = 455

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -1

Query: 189 AVEATEWNTLFLFN--HVFEVTNSTTERHLSDCHCGLICVLKVN 64
           AV A  W  L +F+  + FE+ NS +    S CHC  +C   +N
Sbjct: 278 AVFAVAWLPLNVFHIFNTFELVNSFSVTTFSICHCLAMCSACLN 321


>Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical
           protein C27A7.9 protein.
          Length = 95

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = -1

Query: 429 CGRETTCRG*CDREHGMYVCVGRARDLPECGR*LACQRPKFCC 301
           CG +T  R  C  +    +C G   +L  C   +     K CC
Sbjct: 40  CGNQTRARS-CSSQTASCICTGNTTELQTCNNDVCIFPRKSCC 81


>AF016657-14|AAB93663.3|  495|Caenorhabditis elegans Hypothetical
           protein C16C4.13 protein.
          Length = 495

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = -2

Query: 575 FYLTLMSIPSSSSPFD-AQAFSWKLFLRWGIISRGY-PGDSIFAFAETYFDVAGRRHVGV 402
           F L L+S    S   +    + W +FLRW ++   Y   D+I   A  +     R+  GV
Sbjct: 409 FQLKLVSPNGKSLSIERCSGYGWDMFLRWDVLEEDYIVNDTIVLEARVWI----RKMTGV 464

Query: 401 DATV 390
           +  V
Sbjct: 465 EGDV 468


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,352,962
Number of Sequences: 27780
Number of extensions: 276132
Number of successful extensions: 779
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)