Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00476X
         (591 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.56 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   3.9  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   5.2  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    22   5.2  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   5.2  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -1

Query: 168 NTLFLFNHVFEVTNSTTERHLSDCHCGLICVLKV 67
           N  FL + +F+         LSD   GL C + V
Sbjct: 312 NARFLMDSMFDFAERVNSLRLSDAELGLFCSVVV 345


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +3

Query: 180 LQRRRWSLCSSKAVWHNTGSLAQEIAEFLLQLLRNAESNADNK-TLDVDRLVIDHIQV 350
           L  RR S  S   +     S A E  EF+ + LRN +     +       +VID +Q+
Sbjct: 426 LADRRGSESSDSVLLSPEASKATEAVEFIAEHLRNEDLYIQTREDWKYVAMVIDRLQL 483


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 187 GGVGRCAQAKQFGTTQGRWPKKSPN 261
           GG G+C   + F    GR  +  PN
Sbjct: 32  GGRGKCPSNEIFSRCDGRCQRFCPN 56


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 187 GGVGRCAQAKQFGTTQGRWPKKSPN 261
           GG G+C   + F    GR  +  PN
Sbjct: 32  GGRGKCPSNEIFSRCDGRCQRFCPN 56


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 53  QTSVFTLRTHMRPQWQSE 106
           QT VF L TH    W S+
Sbjct: 171 QTIVFHLETHPNVTWYSQ 188


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,781
Number of Sequences: 438
Number of extensions: 3098
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)