Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00476X
         (591 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) simi...   118   2e-27
At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) simi...   118   4e-27
At5g43890.1 68418.m05367 flavin-containing monooxygenase family ...    29   3.1  
At2g15270.1 68415.m01741 expressed protein                             28   5.4  
At3g01320.1 68416.m00045 paired amphipathic helix repeat-contain...    27   7.1  
At5g33320.1 68418.m03955 triose phosphate/phosphate translocator...    27   9.4  
At3g18100.2 68416.m02302 myb family transcription factor (MYB4R1...    27   9.4  
At3g18100.1 68416.m02301 myb family transcription factor (MYB4R1...    27   9.4  

>At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) similar
           to ribosomal protein GI:19101 from [Hordeum vulgare]
          Length = 175

 Score =  118 bits (285), Expect = 2e-27
 Identities = 58/86 (67%), Positives = 67/86 (77%), Gaps = 1/86 (1%)
 Frame = +1

Query: 1   RYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRR 180
           +YS+EPDN  KSCKARGS+LRVHFKNT ETA AIRK+PL +A RYL++VI  K+ IPF R
Sbjct: 3   KYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPFTR 62

Query: 181 FNGGVGRCAQAK-QFGTTQGRWPKKS 255
           F  GVGR AQAK +    QGRWP KS
Sbjct: 63  FCRGVGRTAQAKNRHSNGQGRWPAKS 88



 Score =  108 bits (259), Expect = 3e-24
 Identities = 51/76 (67%), Positives = 61/76 (80%)
 Frame = +3

Query: 255 AEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIE 434
           A+F+L LL+NAESNA+ K LDVD L I HIQVN+A   RRRTYRAHGRINPYMS+PCHIE
Sbjct: 89  AQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIE 148

Query: 435 VCLSEREDAVARVAPT 482
           + LSE+E+ V +   T
Sbjct: 149 LILSEKEEPVKKEPET 164


>At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) similar
           to GB:P51413 from [Arabidopsis thaliana]; similar to
           ESTs gb|L33542 and gb|AA660016
          Length = 176

 Score =  118 bits (283), Expect = 4e-27
 Identities = 57/86 (66%), Positives = 67/86 (77%), Gaps = 1/86 (1%)
 Frame = +1

Query: 1   RYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRR 180
           +YS+EPDN  KSCKARG++LRVHFKNT ETA AIRK+PL +A RYL++VI  K+ IPF R
Sbjct: 3   KYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPFTR 62

Query: 181 FNGGVGRCAQAK-QFGTTQGRWPKKS 255
           F  GVGR AQAK +    QGRWP KS
Sbjct: 63  FCRGVGRTAQAKNRHSNGQGRWPAKS 88



 Score =  108 bits (259), Expect = 3e-24
 Identities = 51/76 (67%), Positives = 61/76 (80%)
 Frame = +3

Query: 255 AEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIE 434
           A+F+L LL+NAESNA+ K LDVD L I HIQVN+A   RRRTYRAHGRINPYMS+PCHIE
Sbjct: 89  AQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIE 148

Query: 435 VCLSEREDAVARVAPT 482
           + LSE+E+ V +   T
Sbjct: 149 LILSEKEEPVKKEPET 164


>At5g43890.1 68418.m05367 flavin-containing monooxygenase family
           protein / FMO family protein similar to
           flavin-containing monooxygenases YUCCA [gi:16555352],
           YUCCA2 [gi:16555354], and YUCCA3 [gi:16555356] from
           Arabidopsis thaliana; contains Pfam profile PF00743
          Length = 424

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +1

Query: 118 RRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQGRWPKKSPNSSCS 273
           R+ + YL++   K E  P  +FN     C Q+ ++  T G W  K+ +SS S
Sbjct: 96  RQFIEYLESYANKFEITP--QFN----ECVQSARYDETSGLWRIKTTSSSSS 141


>At2g15270.1 68415.m01741 expressed protein
          Length = 194

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +2

Query: 494 SEEKASKKKLARQKEKMMRE 553
           +EEK SKK+L RQK+K  ++
Sbjct: 123 AEEKTSKKRLKRQKKKQKKQ 142


>At3g01320.1 68416.m00045 paired amphipathic helix repeat-containing
            protein low similarity to transcription co-repressor Sin3
            [Xenopus laevis] GI:4960210; contains Pfam profile
            PF02671: Paired amphipathic helix repeat
          Length = 1378

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 7    SREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKE 162
            SR+P     S       + VH +N Y   +    +P R +++ + N+IEK E
Sbjct: 1222 SRKPGRVIDSVYYENVRVLVHEENIYR--LECSSLPSRLSIQLMDNIIEKPE 1271


>At5g33320.1 68418.m03955 triose phosphate/phosphate translocator,
           putative similar to SWISS-PROT:P52178 triose
           phosphate/phosphate translocator [Cauliflower] {Brassica
           oleracea}
          Length = 408

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = +3

Query: 162 VYSIPSLQRRRWSLCSS 212
           V SIPSL RR W L SS
Sbjct: 43  VVSIPSLSRRSWRLASS 59


>At3g18100.2 68416.m02302 myb family transcription factor (MYB4R1)
           contains Pfam profile: PF00249 Myb-like DNA-binding
           domain
          Length = 634

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +3

Query: 177 SLQRRRWSLCSSKAVWHNTGSLAQEIAEFLLQLLRNAESNADNKTLDVDRL 329
           S++RR+WS   +K +      L QE+ + LL       S+ +  T D+D +
Sbjct: 132 SVKRRKWSTEENKNL---AKGLKQEVQKILLSEAIERSSDLEGATYDIDTI 179


>At3g18100.1 68416.m02301 myb family transcription factor (MYB4R1)
           contains Pfam profile: PF00249 Myb-like DNA-binding
           domain
          Length = 847

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +3

Query: 177 SLQRRRWSLCSSKAVWHNTGSLAQEIAEFLLQLLRNAESNADNKTLDVDRL 329
           S++RR+WS   +K +      L QE+ + LL       S+ +  T D+D +
Sbjct: 345 SVKRRKWSTEENKNL---AKGLKQEVQKILLSEAIERSSDLEGATYDIDTI 392


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,616,938
Number of Sequences: 28952
Number of extensions: 253918
Number of successful extensions: 708
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)