Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00474
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    31   0.14 
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    29   0.57 
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   2.3  
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom...    27   3.0  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    27   3.0  
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c...    26   4.0  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    26   4.0  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    26   4.0  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    26   5.3  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    23   6.9  
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar...    25   7.0  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    25   9.2  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   9.2  

>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -2

Query: 301 YHCSKLFGCGILANMETFFSYMRCTI--LVHTILALSSH 191
           +HC  +  C  L N   FF ++ CTI  L H+IL L  H
Sbjct: 186 HHCIWINNCVGLNNARYFFLFLLCTIQLLFHSILRLGYH 224


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +2

Query: 212 CVH*DCASHIREECFHISKDPTTKKLRTVIGKTAVFKYPVKENWGTISLL 361
           C   +C + I +EC    KD  T ++  +I     F+Y + +   T+ LL
Sbjct: 289 CNFKECRAIIHKECSEFIKDNHTSRVAILISMKLAFQYQLSQVIPTLKLL 338


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 277 CGILANMETFFSYMRCTILVHTILALSSHGP 185
           CG+  N    FS MRC +LVH +   S   P
Sbjct: 807 CGLSQNDHVIFS-MRCEVLVHKLGRTSKPSP 836


>SPBC32F12.02 |rec14||recombination protein
           Rec14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +3

Query: 348 PSACSTDRMSPSLCRIYTWS*QCRN*TWNSPSACRPSCTGTEPR--VCAECAPATRF 512
           PS C +  +SP    I   S   R   W++PS C+ S   T+ +  +C + +P  RF
Sbjct: 103 PSECWSSCISPDGQTIAFTSVDGRIAVWDNPSDCKISELDTKGKFGLCIDYSPNGRF 159


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 284 KLRTVIGKTAVFKYPVKENWGTISLLN 364
           +L    GK ++ KYP KEN  ++ LLN
Sbjct: 473 RLEVPSGKFSLLKYPKKENVISLELLN 499


>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 20/71 (28%), Positives = 29/71 (40%)
 Frame = +1

Query: 25  QRTAWTARVQESVHQLSTLPLRATTFPSWATVPTSPPETETKLENINIRCTLRTARAMIT 204
           QRTAW   V  S  + S  P   TTF    +    P +    + +     +L T   ++T
Sbjct: 15  QRTAWQRLVLPSTRKFSLTP---TTFDKTPSGRIPPDQKAANIISSVPSTSLLTKSGVLT 71

Query: 205 LILCALRLCIS 237
           +   AL   IS
Sbjct: 72  VTAAALATAIS 82


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 25  QRTAWTARVQESVHQLSTLPLRATTFPSW 111
           Q TAW ++V  S  Q S++  RAT   SW
Sbjct: 311 QYTAWLSKVDFSSSQASSVAERATRNCSW 339


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 380 VTLPDIHVELTVSQLNLEFAVRVPTFLYGNRTEGL 484
           +TLP +  E   + +N+ F  R+P  +Y   + GL
Sbjct: 341 LTLPPVPTESVPNDINIYFGTRLPNEIYFYISRGL 375


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +2

Query: 239 IREECFHISKDPTTKKLRTVIGKTAVFKYPVKENWGTISLLNGQDVSVTL 388
           IR    ++ +D   K ++  I K        ++ W  +S  +GQD+S T+
Sbjct: 409 IRMVSKYVGEDTFIKGIQKYISKHRYGNTVTEDLWAALSAESGQDISSTM 458


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 23.0 bits (47), Expect(2) = 6.9
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +2

Query: 431 EFAVRVPTFLYGNRTEGLCGVCAGYQISSSPATELSPMTSTCT-ARAGKRLPRS 589
           EF V +P  L      G+         S SPA + SP+ ST T  +  K +P++
Sbjct: 328 EFGVSLPPSLASPEKGGISSTT-----SVSPAAQASPVLSTTTQPKVQKPVPKA 376



 Score = 20.6 bits (41), Expect(2) = 6.9
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 326 PVKENWGTISLLNGQDVSVTLP 391
           P  E W  IS    Q+  V+LP
Sbjct: 313 PTAEPWEPISAPKKQEFGVSLP 334


>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 524

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +2

Query: 224 DCASHIREECFHISKDPTTKKLRTVIGKTAVFKYPVKENWGTISLLNGQDVSVTLPD 394
           DC + I E+ F    D     L +V  K  +F YP+      I L  G+  + T PD
Sbjct: 348 DCVAMIDEDHFVTGSDNGVIALWSVQRKKPLFTYPLAHGLDPI-LAPGRHSAETSPD 403


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 198 DNANIVCTKIVHLIYEK 248
           D  N VCT I+HL ++K
Sbjct: 480 DTLNEVCTDIIHLYHQK 496


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 456 KVGTRTANSRFSCDTVSSTCISGRVTETS 370
           KVG R A + FS   VSS+ I+   T  S
Sbjct: 165 KVGKRAATASFSYTNVSSSVIATAYTSAS 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,720,328
Number of Sequences: 5004
Number of extensions: 60317
Number of successful extensions: 157
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)