Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00474
(638 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0749 - 20282982-20283632,20284081-20284141,20284828-202848... 31 1.0
06_03_0908 - 25858909-25859185,25859765-25859892,25860061-258607... 30 1.3
10_07_0100 + 12861588-12862601 29 3.1
02_01_0627 + 4708648-4708836,4708975-4709064,4709579-4709664,471... 29 3.1
09_02_0412 - 8731559-8731651,8731729-8731762,8732250-8732501,873... 29 4.1
11_01_0152 + 1270752-1270947,1271113-1271438,1271571-1272128 28 7.2
10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129... 28 7.2
05_03_0117 + 8580270-8580677,8581541-8582328,8582412-8582663,858... 28 7.2
01_01_0940 + 7417035-7417124,7417989-7418051,7418632-7418736,741... 28 7.2
09_02_0425 + 9167684-9167803,9168034-9168108,9168200-9168653,916... 27 9.5
05_07_0164 - 28099839-28099861,28100148-28100265,28100546-281007... 27 9.5
02_02_0061 + 6468190-6471046,6471318-6471736 27 9.5
>10_08_0749 -
20282982-20283632,20284081-20284141,20284828-20284872,
20285293-20285672,20286382-20287050
Length = 601
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +1
Query: 52 QESVHQLSTLPLRATTFPSWATVPTSPPETE 144
Q+ + + +LP+++TT PS A+ T PP+ E
Sbjct: 156 QQLLQEFCSLPVKSTTSPSSASKATKPPQEE 186
>06_03_0908 -
25858909-25859185,25859765-25859892,25860061-25860765,
25860882-25860944,25861031-25861084,25861338-25861514,
25861644-25861813,25862011-25862065,25862220-25862918,
25863110-25863173,25863515-25863723,25866138-25866227,
25866390-25866617
Length = 972
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/57 (31%), Positives = 32/57 (56%)
Frame = +1
Query: 439 RPRADLPVREPNRGSVRSVRRLPDFLVTSNGTVTDDFDLYGKSWQASPEKLTELEVP 609
R A+L + NR ++ + + ++TS T+ D++DLYG+ A P++ EVP
Sbjct: 500 RELANLTLIMGNREAISKMHNMSAAVLTSVLTLIDEYDLYGQ--VAYPKRHKHSEVP 554
>10_07_0100 + 12861588-12862601
Length = 337
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 438 PSACRPSCTGTEPRVCAECAPATRFPRHQQRNCH 539
PSA RP+C+ P AP + + +R CH
Sbjct: 181 PSAQRPACSPDYPEPACSTAPPSSSSSYARRPCH 214
>02_01_0627 +
4708648-4708836,4708975-4709064,4709579-4709664,
4710108-4710332,4711251-4711314,4711793-4712491,
4712657-4712764,4712920-4713051,4713183-4713359,
4713920-4713973,4714072-4714134,4714227-4714928,
4715048-4715175,4715563-4715839
Length = 997
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +1
Query: 439 RPRADLPVREPNRGSVRSVRRLPDFLVTSNGTVTDDFDLYGKSWQASPEKLTELEVP 609
R A+L + NR ++ + + ++TS T+ D++DLYG+ A P+ EVP
Sbjct: 526 RELANLTLIMGNREAISKMNNMSAAVLTSVLTLIDEYDLYGQ--VAYPKHHKHSEVP 580
>09_02_0412 -
8731559-8731651,8731729-8731762,8732250-8732501,
8732585-8733996
Length = 596
Score = 28.7 bits (61), Expect = 4.1
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +2
Query: 374 VSVTLPDIHVELTVSQLNLEFAVRVPT 454
+ + +PD+H+E+TV++ ++F V T
Sbjct: 264 MEIVVPDVHMEITVAEPEVQFVASVGT 290
>11_01_0152 + 1270752-1270947,1271113-1271438,1271571-1272128
Length = 359
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/76 (22%), Positives = 32/76 (42%)
Frame = +1
Query: 1 GRETSACCQRTAWTARVQESVHQLSTLPLRATTFPSWATVPTSPPETETKLENINIRCTL 180
G T+ +A + + Q + L + ++ SW +P PP E + I +L
Sbjct: 264 GASTTTTGTASAGSFQQQPNYCSLINKSISSSNVSSWNNMPPPPPVAEGGVHGIGSSYSL 323
Query: 181 RTARAMITLILCALRL 228
+ AM+ + +RL
Sbjct: 324 QHQAAMVKALRDVIRL 339
>10_08_0630 -
19410852-19411235,19411370-19412257,19412440-19412941,
19413662-19414135,19414982-19415040,19415468-19415629
Length = 822
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 452 TFLYGNRTEGLCGVCAGYQISSSPATELSPMTSTCTARAG 571
T+ + + E L G AG + SP T L+P +T +G
Sbjct: 272 TYRFFTQLEALHGTAAGVVAAPSPVTSLAPPPATAVGVSG 311
>05_03_0117 +
8580270-8580677,8581541-8582328,8582412-8582663,
8582744-8582854,8582942-8583020,8583104-8583175,
8583253-8583420
Length = 625
Score = 27.9 bits (59), Expect = 7.2
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +2
Query: 374 VSVTLPDIHVELTVSQLNLEFAVRV 448
+ + +PD+ +E+TV++L +EF V
Sbjct: 207 MEIPVPDVPIEITVAELEVEFVASV 231
>01_01_0940 +
7417035-7417124,7417989-7418051,7418632-7418736,
7419066-7419097,7419173-7419317,7419760-7419945,
7420134-7420224,7420333-7421021
Length = 466
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 207 NIVCTKIVHLIYEKNVSILARIPQPKSF 290
++V ++VH+I +KN+S R P KSF
Sbjct: 201 DVVVFELVHIIRDKNISPTDRAPGLKSF 228
>09_02_0425 +
9167684-9167803,9168034-9168108,9168200-9168653,
9168735-9168784
Length = 232
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 350 ISLLNGQDVSVTLPDIHVELTVSQLNLEFAVRVPTFLYGNRTEGLCGVCA 499
+++ +G+D L D+ EL Q+ L+ ++ L G+CGVCA
Sbjct: 25 LAMASGRDGCERLKDLMRELR-PQIQLKIRLKESLRLISKPLPGVCGVCA 73
>05_07_0164 -
28099839-28099861,28100148-28100265,28100546-28100770,
28100843-28101015,28101292-28101385,28102957-28103048,
28103370-28103400
Length = 251
Score = 27.5 bits (58), Expect = 9.5
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = +2
Query: 359 LNGQDVSVTLPDIHVELTVSQLNLEFAVRVPTFLYGNRTEGLCGVCAGYQISSSP 523
+ G D SVT PD+ + L F V + F++G RT L VCA + + P
Sbjct: 1 MEGSD-SVTSPDLELVAGPLDLGTIFDVDMEDFVHGRRT--LFAVCAYALLKAIP 52
>02_02_0061 + 6468190-6471046,6471318-6471736
Length = 1091
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = -3
Query: 414 TVSSTCISGRVTET--SCPLSKLMVPQFSLTGYLNTAVFPITVRS 286
+V+ +SG + + +CPL +L + +LTG + +F I+V S
Sbjct: 511 SVAGNALSGEIPPSLSNCPLEQLKLSYNNLTGLIPKELFAISVLS 555
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,050,673
Number of Sequences: 37544
Number of extensions: 444298
Number of successful extensions: 1421
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1421
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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