Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00474
         (638 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)                   44   1e-04
SB_26224| Best HMM Match : VWD (HMM E-Value=0)                         32   0.45 
SB_9860| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.60 
SB_10244| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 31   0.79 
SB_14261| Best HMM Match : ig (HMM E-Value=0)                          30   1.8  
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_11578| Best HMM Match : ig (HMM E-Value=3.3e-23)                    29   3.2  
SB_53010| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_47596| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_58594| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_16136| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0025)          28   5.6  
SB_11346| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_44040| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_6200| Best HMM Match : Laminin_EGF (HMM E-Value=0)                  28   5.6  
SB_57009| Best HMM Match : Zona_pellucida (HMM E-Value=0)              28   7.4  
SB_19184| Best HMM Match : Pox_A32 (HMM E-Value=0.04)                  28   7.4  
SB_55591| Best HMM Match : TIL (HMM E-Value=4.2e-09)                   28   7.4  
SB_42038| Best HMM Match : Phage_integrase (HMM E-Value=0.87)          27   9.7  
SB_22436| Best HMM Match : Phage_integrase (HMM E-Value=0.78)          27   9.7  

>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
          Length = 705

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
 Frame = +3

Query: 36  LDCTCTGVGTPAKYTTFEGDDLPFLGNCTYLASRDR---NQTGEHKYQVYATNGPCDDNA 206
           L  TCT  G P  Y TF+G    F G C Y+ S D+   ++     +++ A N PC  +A
Sbjct: 22  LKATCTAFGDP-HYKTFDGRLYSFQGGCNYVMSTDKCPGSKLTLQSFRIDAENIPC-GSA 79

Query: 207 NIVCTKIVHLIYEKNVSILAR 269
            + CTK V +     +  + R
Sbjct: 80  GVTCTKSVTVTLHDTIIHMVR 100


>SB_26224| Best HMM Match : VWD (HMM E-Value=0)
          Length = 736

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +3

Query: 75  YTTFEGDDLPFLGNCTYLASRDRNQTGEHKYQVYATNGPCDDNANIVCTKIVHL-IYEKN 251
           Y TF+G  + F+G C+Y  ++D    G  ++ ++  N     +A + C + + L I EK 
Sbjct: 224 YRTFDGRHIDFIGKCSYTLAQD-CIPGSDQFSLHVQNDKTCGSAGMDCERALLLYIGEKT 282

Query: 252 VSI 260
             I
Sbjct: 283 YKI 285



 Score = 31.1 bits (67), Expect = 0.79
 Identities = 22/82 (26%), Positives = 33/82 (40%)
 Frame = +3

Query: 48  CTGVGTPAKYTTFEGDDLPFLGNCTYLASRDRNQTGEHKYQVYATNGPCDDNANIVCTKI 227
           C   G P  + +F+G    F G C YL +    ++    + V      C  N    C K 
Sbjct: 569 CYTYGDP-HFVSFDGKAFTFGGKCQYLLT----ESLASGFSVTIDTAACSSNKRSSCVKS 623

Query: 228 VHLIYEKNVSILARIPQPKSFE 293
             + Y KNV++L     P+  E
Sbjct: 624 ASVTY-KNVTVLLTHRLPRKDE 644


>SB_9860| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 370

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +1

Query: 358 AQRTGCLRHSAGYTRGADSVATEPGIRRPRADL--PVREPNRGSVRSVRRLPD 510
           +Q +G LRH+   T  A    +  G+   R     P+R+P R S+ S R  PD
Sbjct: 274 SQSSGRLRHTGENTNYAVDSYSRHGVNTKRKSYMDPIRQPRRNSIDSSRLRPD 326


>SB_10244| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 205

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +3

Query: 348 PSACSTDRMSPSLCRIYTWS*QCR-N*TWNSPSACRPSCTGTEPRVCAECA 497
           P  C+ +  S SLC   T    C+ N      S C+ S  G  P  C ECA
Sbjct: 110 PCDCNVNGSSSSLCDHVTGQCSCKANVVGRDCSRCKVSSYGFGPAGCTECA 160


>SB_14261| Best HMM Match : ig (HMM E-Value=0)
          Length = 1337

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 39  DCTCTGVGTPAKYTTFEGDDLPFLGNCTYLASRDRNQTGEHKYQVYATN 185
           +CT  GV  P KY+ + G+          L++   N +GEH +    TN
Sbjct: 461 NCTADGVPKPNKYSLYLGNQTIKTNTNGVLSNIKLNTSGEHVFTCVPTN 509



 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +3

Query: 12  QCVLPADCLDCTCTGVGTPAKYTTFEGDDLPFLGNCTYLASRDRNQTGEHKYQVYATN 185
           QC L     +CT  GV  P KY+ + G+           ++   N +GEH +    TN
Sbjct: 103 QCGLKIS-FNCTADGVPKPNKYSLYLGNQAMKTDTNGEFSNIQLNTSGEHVFTCVPTN 159


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 28/81 (34%), Positives = 35/81 (43%)
 Frame = -2

Query: 439  GEFQVQLRHCQLHVYIRQSDGDILSVEQADGAPVLLNRVLEHRGLPYHCSKLFGCGILAN 260
            GEF V L HC  HV    + GD+    + D +P  L     HR L   C  LF       
Sbjct: 4861 GEFVVVLVHCLAHV----AAGDL----RDDSSPAFLKEF--HRCLAVVCDDLF------- 4903

Query: 259  METFFSYMRCTILVHTILALS 197
               F  Y R + L HT+ +LS
Sbjct: 4904 ---FSRYRRSSALSHTLASLS 4921


>SB_11578| Best HMM Match : ig (HMM E-Value=3.3e-23)
          Length = 259

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +3

Query: 39  DCTCTGVGTPAKYTTFEGDDLPFLGNCTYLASRDRNQTGEHKYQVYATN 185
           +CT  GV  P KY+ + G+          L +   N +GEH +    TN
Sbjct: 111 NCTADGVPKPNKYSLYLGNQAVKTNTNGVLNNIKLNTSGEHVFTCVPTN 159


>SB_53010| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 787

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -2

Query: 451 RHADGEFQVQLRHCQLHVYIRQSDG--DILSVEQADGAPVLLNRVLEHRGLPYH 296
           RH D E  + +RH ++  Y+    G  D+L+ E ADGA ++  +    R   YH
Sbjct: 657 RHGD-ESSIVVRHREVVAYLTNLAGTDDLLNFEHADGAHLIQYKDGVRRSQWYH 709


>SB_47596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 657

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +1

Query: 397 TRGADSVATEPGIRR-PRADLPVREPNRGSVRSVRRLPDFLVTSNGTV 537
           ++     + EPG RR PR  L  R     S R  R+ P F  TSN  V
Sbjct: 579 SKSGKGASDEPGARRGPRPGLVRRRTTLVSFRPPRQSPGFSETSNSEV 626


>SB_58594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1001

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 95  RPSLLGQLYLPRLQRQKPNWRT*ISGV-RYERPVR 196
           RPS   +L L RLQ + P W+T I    ++ER VR
Sbjct: 575 RPSRAERLALKRLQAKLPGWKTCIRKFQKWERGVR 609


>SB_16136| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0025)
          Length = 731

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 95  RPSLLGQLYLPRLQRQKPNWRT*ISGV-RYERPVR 196
           RPS   +L L RLQ + P W+T I    ++ER VR
Sbjct: 226 RPSRAERLALKRLQAKLPGWKTCIRKFQKWERGVR 260


>SB_11346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1706

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 1    GRETSACCQRTAWTARVQESVHQLSTLPLRATTFPSWATV 120
            G +TS  CQ  A    V +++ QLS  P   T   S A+V
Sbjct: 1001 GHKTSLSCQGPATFVPVTQAIQQLSPSPTHGTATVSQASV 1040


>SB_44040| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
 Frame = +2

Query: 227 CASHIREECFHISKDPTTKKLRT---VIGKTAVFKY-PVKENWGTISLLNGQDVSV---T 385
           C  H+R++  H SK+    +L T   +I      KY P K+N    S+      S+   +
Sbjct: 14  CGIHVRQQETHESKEQLDPRLATGISIILLQYTVKYRPGKDNVAPDSVTRAFTASMPASS 73

Query: 386 LPDIHVELT---VSQLNLEFAVRVPTFLYGNRTEGLCGVC 496
           L +I   L    V+++      R PT LYG   E +  +C
Sbjct: 74  LAEILAALCHLGVTRMLHFVKSREPTLLYGRSAENMNNLC 113


>SB_6200| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 683

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +3

Query: 357 CSTDRMSPSLCRIYTWS*QCR-N*TWNSPSACRPSCTGTEPRVCAECA 497
           C+ +  S SLC   T    C+ N      S C+ +  G  P  C ECA
Sbjct: 155 CNVNGSSSSLCDHVTGQCSCKENVVGRDCSRCKVNSYGFGPAGCTECA 202


>SB_57009| Best HMM Match : Zona_pellucida (HMM E-Value=0)
          Length = 564

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 105 FLGNCTYLASRDRNQTGEHKYQV 173
           F GNC   A+RD ++ G  +Y++
Sbjct: 325 FAGNCCSTATRDHDKAGRFRYEI 347


>SB_19184| Best HMM Match : Pox_A32 (HMM E-Value=0.04)
          Length = 540

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +1

Query: 13  SACCQRTAWTARVQESVHQLSTLPLRATTFPSWATVPTSPPETETKLENINIRCTLR 183
           SA  +  A T+ +  S  +  T  L       W+T  TSP  TE +  N+ +R  LR
Sbjct: 296 SAPSRSMAITSLLCGSTFERRTTVLSMGVVSDWSTPATSPYNTEHRRRNVFLREALR 352


>SB_55591| Best HMM Match : TIL (HMM E-Value=4.2e-09)
          Length = 133

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
 Frame = +3

Query: 354 ACSTDRMSPSLCRIY-TWS*QC---RN*T--WNSPSACRPSC-TGTEPRVCAECAP 500
           AC++   S  +C +  T+S  C    N T  W SPS C  +C +G E   C    P
Sbjct: 16  ACNSTSRSDCMCNVLSTYSKACAWNHNITLSWRSPSLCPVTCPSGMEHSECNSACP 71


>SB_42038| Best HMM Match : Phage_integrase (HMM E-Value=0.87)
          Length = 417

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 95  RPSLLGQLYLPRLQRQKPNWRT*ISGV-RYERPVR 196
           RPS   +L L RLQ + P W+T +    ++ER VR
Sbjct: 79  RPSRAERLALKRLQAKLPGWKTCLRKFQKWERGVR 113


>SB_22436| Best HMM Match : Phage_integrase (HMM E-Value=0.78)
          Length = 460

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 95  RPSLLGQLYLPRLQRQKPNWRT*ISGV-RYERPVR 196
           RPS   +L L RLQ + P W+T +    ++ER VR
Sbjct: 75  RPSRAERLALKRLQAKLPGWKTWLRKFQKWERGVR 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,928,265
Number of Sequences: 59808
Number of extensions: 526769
Number of successful extensions: 1873
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1869
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)