Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00474
         (638 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    25   0.62 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.3  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   3.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   4.4  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   5.8  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   5.8  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   5.8  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    22   5.8  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   7.6  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 45  CSPSSPLAARTGLPS 1
           CSPS+P   RTGL S
Sbjct: 333 CSPSNPSITRTGLSS 347


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 269 DPTTKKLRTVIGKTAVFKYP 328
           +P TKKL  V+G+  + K P
Sbjct: 396 NPWTKKLEFVVGQHRILKGP 415


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 269 DPTTKKLRTVIGKTAVFKYP 328
           +P TKKL  V+G+  + K P
Sbjct: 102 NPWTKKLEFVVGQHRILKGP 121


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +2

Query: 230 ASHIREECFHISKDPTTKKLRTVIGKTAVFKYPVKENWGTISLL 361
           A H+R E  +I      K +  VI +  ++ + +    GTI +L
Sbjct: 455 AEHLRNEDLYIQTREDWKYVAMVIDRLQLYIFFLVTTAGTIGIL 498


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 523 SNGTVTDDFDLYG 561
           S GT+T+D+D+ G
Sbjct: 7   SGGTMTEDYDMTG 19


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 523 SNGTVTDDFDLYG 561
           S GT+T+D+D+ G
Sbjct: 7   SGGTMTEDYDMTG 19


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 523 SNGTVTDDFDLYG 561
           S GT+T+D+D+ G
Sbjct: 7   SGGTMTEDYDMTG 19


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 238 MRCTILVHTILALSSHGPFV 179
           + CT++   +LALS+  PF+
Sbjct: 28  VECTMVEKRVLALSTKPPFL 47


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 531 SVAGDEEIW*PAHTPHRPSVRFP 463
           ++  + +IW PA   HR S  +P
Sbjct: 389 TIPKEMKIWIPAFAIHRDSAIYP 411


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,407
Number of Sequences: 438
Number of extensions: 4146
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)