Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00474
         (638 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34360.1 68415.m04207 MATE efflux family protein similar to r...    29   3.4  
At1g61390.1 68414.m06918 S-locus protein kinase, putative contai...    28   4.5  
At3g46500.1 68416.m05048 oxidoreductase, 2OG-Fe(II) oxygenase fa...    28   6.0  

>At2g34360.1 68415.m04207 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 466

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -3

Query: 426 FSCDTVSSTCISGRVTETSCPLSKLMVPQFSLTGYLNTAV 307
           F    +SS  +   V ETSCP +  M+P F L+G  +T V
Sbjct: 271 FELLVLSSGLLPNPVLETSCPRTVWMIP-FGLSGAASTRV 309


>At1g61390.1 68414.m06918 S-locus protein kinase, putative contains
           protein kinase domain, Pfam:PF00069; contains S-locus
           glycoprotein family domain, Pfam:PF00954
          Length = 831

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -3

Query: 432 SRFSCDTVSSTCISGRVTETSCPLSKLMVPQ-FSLTGYLN 316
           ++ SC T SST   G+ T++   ++++  P  + L G+LN
Sbjct: 349 TQLSCHTNSSTKTQGKETDSFYHMTRVKTPDLYQLAGFLN 388


>At3g46500.1 68416.m05048 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to gibberellin 20-oxidase from A.
           thaliana [gi:1109699], N. tabacum [GI:3402332]; contains
           Pfam profile: PF03171 oxidoreductase, 2OG-Fe(II)
           oxygenase family
          Length = 251

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 382 DGDILSVEQADGAPVLLNRVLEHRGLPYHCSKLFGCG 272
           DGD     +  G P+   R+L + G+      ++GCG
Sbjct: 88  DGDYFDTPEMLGNPLTFMRLLHYEGMSDPSKGIYGCG 124


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,683,727
Number of Sequences: 28952
Number of extensions: 335030
Number of successful extensions: 1030
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)