Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00473
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   121   9e-29
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   117   1e-27
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    31   0.17 
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   0.89 
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   3.6  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   4.7  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    26   4.7  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    26   4.7  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  121 bits (291), Expect = 9e-29
 Identities = 57/84 (67%), Positives = 66/84 (78%)
 Frame = +3

Query: 3   DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVL 182
           D Q I EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W+LLAREVLR+RG L
Sbjct: 132 DAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTL 191

Query: 183 PRDQRWDVVVDLFFYRDPEESEKD 254
            R   WDV+ DL+FYRDPEE E++
Sbjct: 192 SRSAPWDVMPDLYFYRDPEEVERE 215


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  117 bits (282), Expect = 1e-27
 Identities = 55/87 (63%), Positives = 66/87 (75%)
 Frame = +3

Query: 3   DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVL 182
           D Q I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W+LLAREVLRLRG +
Sbjct: 133 DAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNI 192

Query: 183 PRDQRWDVVVDLFFYRDPEESEKDNNK 263
            R   W+V+ DL+FYRDPEE E++  +
Sbjct: 193 SRTTAWEVMPDLYFYRDPEEIEREEEQ 219


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +3

Query: 21  EASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 155
           EA   ++P I + +TD+  R V   IP N  S     L+  LL+R
Sbjct: 197 EAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 18  TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 128
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 126 IGLMWWLLAREVLRLRGVLPRDQRWD 203
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +1

Query: 181 FPVTSAGML--WLICSSTVTLKKVKRI 255
           FP  S  ++  WL   +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 370 PTCCTRCSSCFWSTP 414
           PTCC   SSC +S P
Sbjct: 41  PTCCVVGSSCIYSNP 55


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
            Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 210  VDLFFYRDPEESEKDNNKPRNRLWYQLNQK 299
            V L  Y+   E E DN +P N+L+ +L  K
Sbjct: 1069 VCLEIYKAVNELEDDNGRPLNKLFLELPSK 1098


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,249,817
Number of Sequences: 5004
Number of extensions: 41047
Number of successful extensions: 120
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)