Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00473
(592 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0) 144 5e-35
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35) 36 0.025
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5) 30 1.6
SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27) 29 2.8
SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_50413| Best HMM Match : GRP (HMM E-Value=0.15) 29 3.8
SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11) 28 6.6
SB_4520| Best HMM Match : Tsg (HMM E-Value=7.8) 28 6.6
SB_41610| Best HMM Match : RWP-RK (HMM E-Value=3.7) 27 8.7
SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29) 27 8.7
>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
Length = 328
Score = 144 bits (349), Expect = 5e-35
Identities = 62/84 (73%), Positives = 73/84 (86%)
Frame = +3
Query: 3 DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVL 182
DHQP+TEASYVNIPVIA CNTDSPLR VD+AIPCN K HSIGLM+WLLAREVLR+RG +
Sbjct: 130 DHQPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMFWLLAREVLRMRGSI 189
Query: 183 PRDQRWDVVVDLFFYRDPEESEKD 254
R W+++ DL+FYRDPEE+EK+
Sbjct: 190 SRALPWEIMPDLYFYRDPEEAEKE 213
>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
Length = 1772
Score = 35.9 bits (79), Expect = 0.025
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = -1
Query: 217 KSTTTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDLVLHGIAMST-NLSGE---SVLHKA 50
K+TT RWS+G TP ++ H I L+ HG ST NL+ E VL++
Sbjct: 1396 KTTTDKTRWSKGQTPNGKVAQKSKFQH--GIAGTQLIYHGTGPSTKNLTTEQAKQVLNEN 1453
Query: 49 ITGMLTY 29
G +TY
Sbjct: 1454 ELGTMTY 1460
>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
Length = 315
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 120 HSIGLMWWLLAREVLRLRGVLP 185
H G +WW+L E LR + VLP
Sbjct: 46 HDDGSVWWVLTSESLRAKAVLP 67
>SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 987
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 394 SCFWSTPCSRRMVCPGTR*VEHNCRRTSRRHRSA 495
+C W+ P R+ PG R H T+R H +A
Sbjct: 904 TCSWALPAHYRVHVPGQRSASHEAFDTTRPHENA 937
>SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27)
Length = 418
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -2
Query: 222 RTNQPQHPSAGHGEA-HHEASTLHVPTTTTSNQ*SGKTWCC 103
R QP H ++ + A HH A LH P +TS + W C
Sbjct: 176 RDGQPCHGASMNNFAYHHAADFLHYPPVSTSYMPAHPYWTC 216
>SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = -1
Query: 229 R*KNKSTTTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDL---VLHGIAMSTNLSGESVL 59
R N+ T ++ STP + N+ ++P EW ++ H + L+GES
Sbjct: 3 RGSNRRPTFKYKFGDSSTPFYSALKKQNDRSMRPWEWHEMKARYSHAQTLINALTGESKY 62
Query: 58 HKAITG 41
+TG
Sbjct: 63 EFTLTG 68
>SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1601
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -1
Query: 178 TPRSLNTSRANNHHIKPIEWEDLVLHGIAMSTNLSGESVLH 56
T +SLN S N + P EW + V+ G+ LSG ++L+
Sbjct: 864 TAQSLNVSVDNLKFLAPTEWRE-VIPGLKQEILLSGSNMLN 903
>SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)
Length = 487
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -3
Query: 230 TVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVGR-LGVAWDSNVHK 81
+V Q+ + P +T HT+ T P HQ + +GR G DSNV +
Sbjct: 241 SVTNQMRGHEPRSITYNHTSITAPLTTGYPDHQGSYMGRYAGSVADSNVSR 291
>SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11)
Length = 1702
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +3
Query: 66 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQR 197
+SPL + I +PCNT +S+ W+LLA + ++ VL D R
Sbjct: 495 ESPLSYDLILVPCNTPNSNH----WFLLA-VLPHMKAVLLLDSR 533
>SB_4520| Best HMM Match : Tsg (HMM E-Value=7.8)
Length = 594
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = -1
Query: 196 RWSRGSTPRSLNTSRA---NNHHIKPIEWE-DLVLHGIAMSTNLSGESVLH 56
RWS +TPR TS N H+ P+ + D+ H A + +L S ++
Sbjct: 62 RWSHATTPRGGGTSSVLALNLAHVPPVSGDYDVAFHKHAAAVHLEDWSTIN 112
>SB_41610| Best HMM Match : RWP-RK (HMM E-Value=3.7)
Length = 195
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -2
Query: 222 RTNQPQHPSAGHGEAHHEASTLHVPTTTTSNQ*SGKT 112
R ++P P HG H++ ST P SN+ G T
Sbjct: 155 RVHRPATPGREHGVQHNQISTSCEPEFAQSNETGGLT 191
>SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29)
Length = 1202
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Frame = -2
Query: 237 QGHGRRTNQPQHPSAGHGEAHHEASTLHVPTTT--TSNQ*SGKTWCCMG*QCPQILVGSL 64
Q HG +NQP +H + H+PT TS + T QCP GS+
Sbjct: 1067 QEHGPGSNQPSDKIHSPATSHTSPVSTHLPTPNCHTSTPHTTTTTPNSNEQCPNTAAGSV 1126
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,543,316
Number of Sequences: 59808
Number of extensions: 342370
Number of successful extensions: 886
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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