Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00473
         (592 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical pr...   113   7e-26
AF039043-7|AAY86190.1|  103|Caenorhabditis elegans Hypothetical ...    29   1.9  
U39742-3|AAY86225.1|  188|Caenorhabditis elegans Hypothetical pr...    28   4.3  
AL032621-5|CAA21492.2|  404|Caenorhabditis elegans Hypothetical ...    28   4.3  
AL033510-7|CAA22069.1|  124|Caenorhabditis elegans Hypothetical ...    28   5.7  
L14331-9|AAA28101.2| 1845|Caenorhabditis elegans Dicer related p...    27   10.0 

>Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical
           protein B0393.1 protein.
          Length = 276

 Score =  113 bits (273), Expect = 7e-26
 Identities = 49/89 (55%), Positives = 66/89 (74%), Gaps = 5/89 (5%)
 Frame = +3

Query: 3   DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVL 182
           DHQ +TEASYV +PVI+  NT+SPL+ +DI +PCN K   SIGLMWW+LARE+L LRG +
Sbjct: 130 DHQAVTEASYVGVPVISFVNTESPLKLIDIGVPCNNKGERSIGLMWWMLAREILILRGKI 189

Query: 183 PRDQRW-----DVVVDLFFYRDPEESEKD 254
            R   +     +++ DL+FYRDP E+EK+
Sbjct: 190 SRQTGFVLEGKEIMPDLYFYRDPTETEKE 218


>AF039043-7|AAY86190.1|  103|Caenorhabditis elegans Hypothetical
           protein F39C12.4 protein.
          Length = 103

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +1

Query: 376 CCTRCSSCFWSTPCSRRMVCP 438
           CCT    CF ST CS   VCP
Sbjct: 53  CCTN-EECFMSTECSYSAVCP 72


>U39742-3|AAY86225.1|  188|Caenorhabditis elegans Hypothetical
           protein C25F6.8 protein.
          Length = 188

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 57  CNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVL 164
           CNTD+  R +     CNT   + +G+ + L+AR ++
Sbjct: 49  CNTDAEFRLIQCCSSCNT---NGVGIAYDLVARSLV 81


>AL032621-5|CAA21492.2|  404|Caenorhabditis elegans Hypothetical
           protein Y45F3A.8 protein.
          Length = 404

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = +2

Query: 29  ICQHSCDCFVQHRLPTKICGHCYPM---QHQVFPLYWFD 136
           +C+HS    +      K CGHC PM   +HQ  P +  D
Sbjct: 342 LCEHSRYKTLMENYCPKACGHCIPMCRDRHQNCPQFHED 380


>AL033510-7|CAA22069.1|  124|Caenorhabditis elegans Hypothetical
           protein Y40H7A.11 protein.
          Length = 124

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 108 TKSSHSIGLMWWLLA 152
           T+  H IG+MWWL A
Sbjct: 72  TRVEHKIGIMWWLCA 86


>L14331-9|AAA28101.2| 1845|Caenorhabditis elegans Dicer related
            protein 1 protein.
          Length = 1845

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 156  EVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDNNKPRN 272
            E L +   + + +R +  V+L  Y D +E+++D N P N
Sbjct: 1205 EALEMSEDMEKPRRLEDTVNLEDYGDDQENQEDENTPTN 1243


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,732,182
Number of Sequences: 27780
Number of extensions: 243333
Number of successful extensions: 804
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)