Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00473
         (592 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    25   0.42 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    25   0.42 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   0.97 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   0.97 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   1.3  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   2.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   2.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   3.9  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   6.8  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   6.8  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.4 bits (53), Expect = 0.42
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 208 TTSQRWSRGSTPRSLNTSRANNHHIKP 128
           T +Q WSRG+T  SL+ S  +   + P
Sbjct: 18  TQAQHWSRGNTWLSLDNSNMSMSSVGP 44


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.4 bits (53), Expect = 0.42
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 208 TTSQRWSRGSTPRSLNTSRANNHHIKP 128
           T +Q WSRG+T  SL+ S  +   + P
Sbjct: 18  TQAQHWSRGNTWLSLDNSNMSMSSVGP 44


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 0.97
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 171 RGVLPRDQRWDVVVDLFFYRDPEESEKDNNKPRNRLW 281
           R +LPR ++  +   LF Y  P  SE   N+  +R+W
Sbjct: 603 RLLLPRGKKEGMPFQLFLYVSPVSSE--YNQYNSRIW 637


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 0.97
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 171 RGVLPRDQRWDVVVDLFFYRDPEESEKDNNKPRNRLW 281
           R +LPR ++  +   LF Y  P  SE   N+  +R+W
Sbjct: 603 RLLLPRGKKEGMPFQLFLYVSPVSSE--YNQYNSRIW 637


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 219 TNQPQHPSAGHGEAHHEASTLH 154
           T  P H + GHG +H  A+  H
Sbjct: 411 TPGPHHHTMGHGHSHIHATPHH 432


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 528 CINTLHWLIILHES 569
           C N ++W+I LH S
Sbjct: 418 CFNLMYWIIYLHIS 431


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 528 CINTLHWLIILHES 569
           C N ++W+I LH S
Sbjct: 418 CFNLMYWIIYLHIS 431


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 481 RHRSALVGWTA 513
           RH S L+GW+A
Sbjct: 391 RHTSVLIGWSA 401


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +2

Query: 95  YPMQHQVFPLYWFDVVVV 148
           +P  ++++P Y+FD  V+
Sbjct: 159 FPAIYEIYPNYFFDSSVI 176


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +2

Query: 95  YPMQHQVFPLYWFDVVVV 148
           +P  ++++P Y+FD  V+
Sbjct: 159 FPAIYEIYPNYFFDSSVI 176


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,524
Number of Sequences: 438
Number of extensions: 2793
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)