Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00473
(592 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi... 125 3e-29
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi... 121 4e-28
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi... 97 6e-21
At5g23690.1 68418.m02777 polynucleotide adenylyltransferase fami... 30 1.0
At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin fa... 29 3.1
At1g72710.1 68414.m08408 casein kinase, putative similar to case... 28 5.4
At3g54570.1 68416.m06038 calmodulin-binding protein-related cont... 27 7.1
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP... 27 9.4
>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
to laminin receptor-like protein GB:U01955 [Arabidopsis
thaliana]; identical to cDNA laminin receptor homologue
GI:16379
Length = 298
Score = 125 bits (301), Expect = 3e-29
Identities = 52/85 (61%), Positives = 68/85 (80%)
Frame = +3
Query: 3 DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVL 182
DHQPI E + NIP+IA C+TDSP+RFVDI IP N K HSIG ++WLLAR VL++RG +
Sbjct: 134 DHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 193
Query: 183 PRDQRWDVVVDLFFYRDPEESEKDN 257
Q+WDV+VDLFFYR+PEE++ ++
Sbjct: 194 AAGQKWDVMVDLFFYREPEETKPED 218
>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 280
Score = 121 bits (291), Expect = 4e-28
Identities = 51/87 (58%), Positives = 68/87 (78%)
Frame = +3
Query: 3 DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVL 182
DHQPI E + NIP IA C+TDSP+ FVDI IP N K HSIG ++WLLAR VL++RG +
Sbjct: 135 DHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 194
Query: 183 PRDQRWDVVVDLFFYRDPEESEKDNNK 263
Q+WDV+VDLFFYR+PEE++++ ++
Sbjct: 195 LAAQKWDVMVDLFFYREPEEAKQEGDE 221
>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 332
Score = 97.5 bits (232), Expect = 6e-21
Identities = 42/71 (59%), Positives = 53/71 (74%)
Frame = +3
Query: 3 DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVL 182
DHQPI E + NIP IA C+TDSP+ FVDI IP N K HSIG ++WLLAR VL++RG +
Sbjct: 135 DHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 194
Query: 183 PRDQRWDVVVD 215
Q+WDV+V+
Sbjct: 195 LAAQKWDVMVN 205
>At5g23690.1 68418.m02777 polynucleotide adenylyltransferase family
protein low similarity to SP|P13685 Poly(A) polymerase
(EC 2.7.7.19) {Escherichia coli O157:H7}; contains Pfam
profile PF01743: polyA polymerase family protein
Length = 527
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 222 FYRDPEESEKDNNKPRNRLWYQLNQK*LLLS 314
F D + +K +++PR+R W QLN K L LS
Sbjct: 45 FATDSDRQDKVSDEPRDREWKQLNSKDLGLS 75
>At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin
family protein contains Pfam domain, PF01190: Pollen
proteins Ole e I family
Length = 146
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +3
Query: 66 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWD 203
D L ++A+ C TKS + + ++ V + +P +RWD
Sbjct: 49 DHVLEGAEVAVLCITKSGEVVNYQAFTNSKGVYTVAETMPESERWD 94
>At1g72710.1 68414.m08408 casein kinase, putative similar to casein
kinase I, delta isoform [Arabidopsis thaliana]
SWISS-PROT:P42158
Length = 465
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2
Query: 252 PFHFLQGHGRRTNQPQHPSAGHGEAHHEASTLHVPTTTTSN 130
P +FL G GRR NQ G + + +++ H+P N
Sbjct: 131 PDNFLMGLGRRANQVYVIDFGLAKKYRDSNHQHIPYRENKN 171
>At3g54570.1 68416.m06038 calmodulin-binding protein-related
contains similarity to potato calmodulin-binding protein
PCBP GI:17933110 from [Solanum tuberosum]
Length = 417
Score = 27.5 bits (58), Expect = 7.1
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -3
Query: 125 RVGRLGVAWDSNVHKS 78
R GR+G WD+NVH++
Sbjct: 107 RSGRIGRCWDANVHRA 122
>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
identical to SP|Q9GCB9 Mitochondrial ribosomal protein
S2 {Arabidopsis thaliana}; contains Pfam profile
PF00318: ribosomal protein S2
Length = 219
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 15 ITEASYVNIPVIALCNTDSPLRFVD-IAIPCNTKSS 119
I EAS + IPV+A+ + + PL F + I P + S
Sbjct: 146 ILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,065,608
Number of Sequences: 28952
Number of extensions: 225989
Number of successful extensions: 612
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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