Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00472
         (409 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    23   1.3  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    23   1.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   3.1  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   5.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   7.1  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   7.1  

>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 388 CLLNIY*LLKQYLNVDVDIVIKLVSRSL 305
           CLL  + L+    NVD DI++ L+   L
Sbjct: 76  CLLEAFSLVDDEANVDEDIMLGLLPDQL 103


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 388 CLLNIY*LLKQYLNVDVDIVIKLVSRSL 305
           CLL  + L+    NVD DI++ L+   L
Sbjct: 76  CLLEAFSLVDDEANVDEDIMLGLLPDQL 103


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 181 QVPSTIGKSIQGILAYDKTHTTASATSLKVESDSLSSISV 300
           QVP T   ++        T+++A  +S  +ES S+ S S+
Sbjct: 529 QVPLTSSSNVNNNSGNGNTNSSARDSSPAIESISVDSGSI 568


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 30  YISPRRCGDRRMRSP 74
           YI+   CGD R+ SP
Sbjct: 366 YINTAPCGDARIFSP 380


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +2

Query: 227 MIRLTPPLPQHHSRWNRIHFRQSPYEERTR 316
           ++RL+  L ++ S+W  ++  Q+  ++RTR
Sbjct: 219 LLRLSR-LVRYVSQWEEVYILQNLQKKRTR 247


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 257 HHSRWNRIHFRQSPY 301
           HH   +++ ++QSPY
Sbjct: 74  HHLHHHQVLYQQSPY 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,097
Number of Sequences: 438
Number of extensions: 2042
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)