Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00471
(704 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces... 140 2e-34
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c... 28 1.5
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 27 2.0
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr... 27 2.0
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|... 27 2.0
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb... 27 2.0
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 26 6.0
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 8.0
>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 249
Score = 140 bits (339), Expect = 2e-34
Identities = 64/87 (73%), Positives = 73/87 (83%)
Frame = +3
Query: 249 SRQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 428
+ +VELYAEKV RGLCA+AQ ESLRYKL+ GLAVRRA YGVLR++ME+GA+GCEVV+S
Sbjct: 82 AENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYGVLRYVMEAGAKGCEVVIS 141
Query: 429 GKLRGQRAKSMKFVDGLMIHSGDPCND 509
GKLR RAKSMKF DG MIHSG P D
Sbjct: 142 GKLRAARAKSMKFADGFMIHSGQPAVD 168
Score = 127 bits (307), Expect = 1e-30
Identities = 63/82 (76%), Positives = 68/82 (82%)
Frame = +1
Query: 13 AVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 192
A ISKKRKFV DGVF AELNEF TREL+E+GYSG EVRVTP RSEIII AT TQ VLG
Sbjct: 3 AAFTISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLG 62
Query: 193 EKGRRIRELTSVVQKRFNIPDN 258
EKGRRIRELT++VQKRF +N
Sbjct: 63 EKGRRIRELTALVQKRFKFAEN 84
Score = 61.7 bits (143), Expect = 1e-10
Identities = 31/61 (50%), Positives = 43/61 (70%)
Frame = +2
Query: 494 RPLQ*YVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLE 673
+P ++++ATRHVLLRQGVLG+KVKIMLP + K KK PD ++V +PK+E +
Sbjct: 164 QPAVDFIDSATRHVLLRQGVLGVKVKIMLP---EPKTRQKKSLPDIVVVLDPKEEEPITK 220
Query: 674 P 676
P
Sbjct: 221 P 221
>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 27.9 bits (59), Expect = 1.5
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Frame = +2
Query: 89 LGSWPRTATPAWKCGSLPSARRSLLWP------PGHRVCSERKDAESVSSLP 226
L S+P AW+ LPS R+ L P P R+ ++K A +SS+P
Sbjct: 8 LRSFPSVQRTAWQRLVLPSTRKFSLTPTTFDKTPSGRIPPDQKAANIISSVP 59
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 27.5 bits (58), Expect = 2.0
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Frame = +1
Query: 547 RSTRNQGQNHVAVGPAR----QERPEEATTRPHPGNRAQGRARAPRADQRSALP 696
R T+ Q + V R QE EE+T P + GR+R R ALP
Sbjct: 532 RVTKTQSRRETKVKRRRKARIQETSEESTVVNEPNEKPDGRSRRERKKVNYALP 585
>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 136
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 281 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 385
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 281 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 385
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 136
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 281 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 385
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 25.8 bits (54), Expect = 6.0
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Frame = -3
Query: 588 SHGNMILTLIPSTPCL----RSTCLVAVLTYHCKGLQSGS*VHLQTSLIWHVDHAA 433
S G+++ L S PC R+ LT KG S S +L+T L W HA+
Sbjct: 408 SFGDLLDLLYASLPCTDRAGRTVVHHICLTAGIKGRGSASRYYLETLLNWAKKHAS 463
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 650 KDEPVPLEPTSEVRSLA 700
K+ PVPLEP EV +LA
Sbjct: 563 KNNPVPLEPLVEVDALA 579
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,015,952
Number of Sequences: 5004
Number of extensions: 63333
Number of successful extensions: 184
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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