Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00469
         (560 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   1.4  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   4.1  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   5.5  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   7.2  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    21   7.2  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   9.6  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    21   9.6  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   9.6  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = +2

Query: 395 PEPEVPPPGLEALAPPSRRSIKPTFHTTRKPTCNNHLVPLLD 520
           P+ E+P P   +     + S+ PT   T  P     L P  D
Sbjct: 73  PKREIPSPKRSSPILAEKVSVSPTTPPTPSPPPEERLTPSKD 114


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 152 SMKSTMEDEKLKEKISDSD 208
           S+ S  EDE+++ ++SD D
Sbjct: 18  SLLSKKEDEEVEHRLSDRD 36


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 395 PEPEVPPPGLEALAPPS 445
           P P+VPP  L  + PP+
Sbjct: 176 PLPQVPPLPLPPIFPPT 192


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -2

Query: 205 RVRDLFLELLIL 170
           RV+DLFLE ++L
Sbjct: 581 RVKDLFLEAVLL 592



 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 72  RQRSTETRMTSKRRPSRPR 128
           R+RST ++ T     +RPR
Sbjct: 43  RKRSTSSQSTEGENDARPR 61


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 80  KYRNEDDKQKETIQAKNALESY 145
           ++ N D  Q+ + +  NA ESY
Sbjct: 365 QFNNSDFVQRNSTEFDNATESY 386


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 208 QADHPRQVQRHHQ 246
           Q  HP+  Q HHQ
Sbjct: 172 QEQHPQHHQPHHQ 184


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/23 (34%), Positives = 10/23 (43%)
 Frame = +2

Query: 437 PPSRRSIKPTFHTTRKPTCNNHL 505
           PP    I+P      +P CN  L
Sbjct: 95  PPIHHQIRPPILHDTQPMCNPQL 117


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 208 QADHPRQVQRHHQ 246
           Q  HP+  Q HHQ
Sbjct: 174 QEQHPQHHQPHHQ 186


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,880
Number of Sequences: 336
Number of extensions: 2784
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13786212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)