Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00468
(703 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00066-9|AAA50743.3| 780|Caenorhabditis elegans Mediator protei... 38 0.009
Z29561-4|CAD91697.1| 498|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 29 2.4
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z69661-2|CAA93494.1| 925|Caenorhabditis elegans Hypothetical pr... 29 4.3
U21319-7|AAL16307.1| 469|Caenorhabditis elegans Hypothetical pr... 29 4.3
EF090262-1|ABK78775.1| 120|Caenorhabditis elegans glycoprotein ... 29 4.3
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ... 29 4.3
Z81132-8|CAB03429.1| 90|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z81132-7|CAB03428.1| 86|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z78059-1|CAH04725.2| 348|Caenorhabditis elegans Hypothetical pr... 28 7.4
U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/... 28 7.4
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/... 28 7.4
AC006629-1|AAK18925.1| 330|Caenorhabditis elegans Hypothetical ... 27 9.8
>U00066-9|AAA50743.3| 780|Caenorhabditis elegans Mediator protein
15, isoform a protein.
Length = 780
Score = 37.5 bits (83), Expect = 0.009
Identities = 24/75 (32%), Positives = 33/75 (44%)
Frame = -3
Query: 461 SVVRPRSTAACPCDSRAKTGRSDRTGSPRRRAATVPPADPDSLSTLNLVTHPTLVPRTQY 282
SV++P + PC + A G + G+P RA P P S N P V TQ
Sbjct: 78 SVLQPSQFHSPPCTTAALLGNTPAGGTPGYRAPVPPDPQPTSAQARN---PPVTVATTQA 134
Query: 281 SRSGTGST*PGYIPA 237
S + + PG +PA
Sbjct: 135 STTPSAPNPPGGLPA 149
>Z29561-4|CAD91697.1| 498|Caenorhabditis elegans Hypothetical
protein R10E12.1d protein.
Length = 498
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/70 (28%), Positives = 25/70 (35%)
Frame = -3
Query: 449 PRSTAACPCDSRAKTGRSDRTGSPRRRAATVPPADPDSLSTLNLVTHPTLVPRTQYSRSG 270
P++ A P + S R + + A PP P V P PRTQ S
Sbjct: 339 PKAVLAKPTPMQTPMTPSFRGTNAAQSPANAPPRPPPPRPAAPSVESPIPPPRTQQSMQA 398
Query: 269 TGST*PGYIP 240
T P Y P
Sbjct: 399 TPGAPPQYNP 408
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical protein
ZK945.9 protein.
Length = 3178
Score = 29.5 bits (63), Expect = 2.4
Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 8/137 (5%)
Frame = -3
Query: 605 HCRSDPHPMGAHGLCVNKFPITGFTECHGSCDLELSITTRPVRTS----LRASVVRPRST 438
+C ++ GA+ V+ P+T F G+ + +++T R S +VV P +T
Sbjct: 1031 NCLTEFGKNGAYSASVSFNPMTSFVPATGTYEFLINVTNRASGESASHIFTMNVVLPTTT 1090
Query: 437 AACP----CDSRAKTGRSDRTGSPRRRAATVPPADPDSLSTLNLVTHPTLVPRTQYSRSG 270
P S G++ TG+ T +LST + V T + S +G
Sbjct: 1091 TETPPTTVSSSDDAGGKTGGTGATGGTGGTGSGGSATTLSTGDAVRSTTSGSGSGQSSTG 1150
Query: 269 TGST*PGYIPALRGKRG 219
+G+ G + G G
Sbjct: 1151 SGAGGSGTTASGSGSGG 1167
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 29.5 bits (63), Expect = 2.4
Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 8/137 (5%)
Frame = -3
Query: 605 HCRSDPHPMGAHGLCVNKFPITGFTECHGSCDLELSITTRPVRTS----LRASVVRPRST 438
+C ++ GA+ V+ P+T F G+ + +++T R S +VV P +T
Sbjct: 1031 NCLTEFGKNGAYSASVSFNPMTSFVPATGTYEFLINVTNRASGESASHIFTMNVVLPTTT 1090
Query: 437 AACP----CDSRAKTGRSDRTGSPRRRAATVPPADPDSLSTLNLVTHPTLVPRTQYSRSG 270
P S G++ TG+ T +LST + V T + S +G
Sbjct: 1091 TETPPTTVSSSDDAGGKTGGTGATGGTGGTGSGGSATTLSTGDAVRSTTSGSGSGQSSTG 1150
Query: 269 TGST*PGYIPALRGKRG 219
+G+ G + G G
Sbjct: 1151 SGAGGSGTTASGSGSGG 1167
>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical protein
F40E10.4 protein.
Length = 1410
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -2
Query: 459 CCQAAKYSGVSVRLTCEDGTVRPHRVATPARCHC 358
CC A K V++ C++GT + V +C C
Sbjct: 1367 CCTAVKKKQRKVKMICKNGTTKISTVHIIRQCQC 1400
>Z69661-2|CAA93494.1| 925|Caenorhabditis elegans Hypothetical
protein F48F7.4 protein.
Length = 925
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -2
Query: 342 GLTKHPKPGHASYSGTKNPVQPERDREYVTRIYSSASGEARRN--HDSNY 199
G +H G+ +SG Q ++ + YV Y +A+GE R D+NY
Sbjct: 577 GNNQHMYNGNEGHSGAHEQPQQQQQQRYVN--YGNATGERERQPRRDNNY 624
>U21319-7|AAL16307.1| 469|Caenorhabditis elegans Hypothetical
protein C30G12.1 protein.
Length = 469
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = -3
Query: 494 TTRPVRTSLRASVVRPR--STAACPCDSRAKTGRSDRTGSPRRRAATVPPADPDSLSTLN 321
TT T++ + PR S P + + D+T +P AT+P A SLS++
Sbjct: 300 TTTRTSTAIPTTTTTPRQISLQTIPFSTTTRQPNFDKTKTP----ATMPSASSSSLSSIQ 355
Query: 320 LVTHPTLV 297
V P ++
Sbjct: 356 TVVDPIIL 363
>EF090262-1|ABK78775.1| 120|Caenorhabditis elegans glycoprotein
hormone alpha 2 protein.
Length = 120
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/52 (25%), Positives = 22/52 (42%)
Frame = -2
Query: 504 TIYNNQTGTHESACECCQAAKYSGVSVRLTCEDGTVRPHRVATPARCHCAAC 349
T N T + +CC+ ++ + L C G R R+ + +C C C
Sbjct: 68 TFPNPLTKKYSVHAKCCRMVEWEMLETELKCSKGN-RNLRIPSATQCECFDC 118
>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -2
Query: 459 CCQAAKYSGVSVRLTCEDGTVRPHRVATPARCHC 358
CC A K V++ C++GT + V +C C
Sbjct: 1367 CCTAVKKKQRKVKMICKNGTTKISTVHIIRQCQC 1400
>Z81132-8|CAB03429.1| 90|Caenorhabditis elegans Hypothetical
protein T26E4.10 protein.
Length = 90
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -2
Query: 393 PHRVATPARCHCAACGPGLTK 331
P ATPA C+C CG G K
Sbjct: 70 PDPAATPAPCNCGCCGCGWGK 90
>Z81132-7|CAB03428.1| 86|Caenorhabditis elegans Hypothetical
protein T26E4.9 protein.
Length = 86
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -2
Query: 393 PHRVATPARCHCAACGPGLTK 331
P ATPA C+C CG G K
Sbjct: 66 PDPAATPAPCNCGCCGCGWGK 86
>Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical
protein C11E4.6 protein.
Length = 1170
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = -2
Query: 531 GVPRLLR-LGTIYNNQTGTHESACECCQAAKYSGVSVRLTCEDGT 400
G P + R IY + EC QA + G S+ T EDGT
Sbjct: 205 GTPDIKRPFPAIYPFHLAAKYNHVECMQALREHGFSINYTTEDGT 249
>Z78059-1|CAH04725.2| 348|Caenorhabditis elegans Hypothetical
protein C34B4.5 protein.
Length = 348
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 38 NKTLFHLMKKYFEHFYIIKCINILMLPGVFFKTTTILYF 154
NKT ++K+ F F + + NI++L G K TT+ F
Sbjct: 253 NKTEIIILKQAFFIFLMFQIYNIIVLYGKTLKMTTVTAF 291
>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
c protein.
Length = 1510
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -3
Query: 485 PVRTSLRASVVRPRSTAACPCDSRAKTGRSDRTGSPRR 372
P R++ R+S+ R R+ + P D ++GRS + RR
Sbjct: 361 PYRSTSRSSLSRHRNRSRSPSDGMDRSGRSSSRRTHRR 398
>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
a protein.
Length = 1507
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -3
Query: 485 PVRTSLRASVVRPRSTAACPCDSRAKTGRSDRTGSPRR 372
P R++ R+S+ R R+ + P D ++GRS + RR
Sbjct: 361 PYRSTSRSSLSRHRNRSRSPSDGMDRSGRSSSRRTHRR 398
>AC006629-1|AAK18925.1| 330|Caenorhabditis elegans Hypothetical
protein F12E12.5 protein.
Length = 330
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -3
Query: 446 RSTAACPCDS-RAKTGRSDRTGSPRRRAATVPPADPDSLSTLNLVTHPTL 300
RS+A P S R +GSPR + A P P ++NL T P +
Sbjct: 181 RSSAPAPTSSARLSPITVSTSGSPRAQLAISPQEKPPQKLSINLGTSPMI 230
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,227,430
Number of Sequences: 27780
Number of extensions: 354617
Number of successful extensions: 1031
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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