Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00468
         (703 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42230.2 68415.m05226 tubulin-specific chaperone C-related we...    31   0.98 
At2g42230.1 68415.m05227 tubulin-specific chaperone C-related we...    31   0.98 
At5g66430.1 68418.m08378 S-adenosyl-L-methionine:carboxyl methyl...    29   2.3  
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim...    29   2.3  
At4g26450.1 68417.m03805 expressed protein                             29   3.0  
At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyc...    29   3.0  
At4g32640.1 68417.m04646 sec23/sec24 transport protein-related         28   6.9  
At2g36350.1 68415.m04461 protein kinase, putative similar to pro...    28   6.9  

>At2g42230.2 68415.m05226 tubulin-specific chaperone C-related weak
           similarity to Tubulin-specific chaperone C
           (Tubulin-folding cofactor C) (CFC) (Swiss-Prot:Q15814)
           [Homo sapiens]
          Length = 568

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 356 PPADPDSLSTLNLVTHPTLVP 294
           PP DPD +   NL+ HP  VP
Sbjct: 10  PPPDPDPIQNSNLIIHPRRVP 30


>At2g42230.1 68415.m05227 tubulin-specific chaperone C-related weak
           similarity to Tubulin-specific chaperone C
           (Tubulin-folding cofactor C) (CFC) (Swiss-Prot:Q15814)
           [Homo sapiens]
          Length = 562

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 356 PPADPDSLSTLNLVTHPTLVP 294
           PP DPD +   NL+ HP  VP
Sbjct: 10  PPPDPDPIQNSNLIIHPRRVP 30


>At5g66430.1 68418.m08378 S-adenosyl-L-methionine:carboxyl
           methyltransferase family protein similar to
           SAM:salicylic acid carboxyl methyltransferase (SAMT)
           [GI:6002712][Clarkia breweri] and to SAM:benzoic acid
           carboxyl methyltransferase
           (BAMT)[GI:9789277][Antirrhinum majus]
          Length = 354

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -1

Query: 697 ADIVNT--TCCQICNEKPQALSKCVPKSIPSSD 605
           A+IVNT    CQ CN+KP  +  C+   +P +D
Sbjct: 63  AEIVNTINVLCQQCNQKPPEIDCCL-NDLPDND 94


>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
           similarity to RNA helicase RH26 [Arabidopsis thaliana]
           GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain; identical to cDNA DEAD box RNA helicase, RH26
           GI:3776024
          Length = 850

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 416 RAKTGRSDRTGSPRRRAATVPPAD 345
           R K G  DR GSP RR  +  PAD
Sbjct: 148 RGKEGEMDRFGSPNRRRTSGEPAD 171


>At4g26450.1 68417.m03805 expressed protein
          Length = 1248

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -3

Query: 317 VTHPTLVPRTQYSRSGTGST*PGY 246
           V+H +LV  + Y+R+ TG T PGY
Sbjct: 507 VSHESLVNNSTYNRTHTGRTGPGY 530


>At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein similar to cyclophylin
           [Digitalis lanata] GI:1563719; contains Pfam profile
           PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type; contains AT-donor splice site at
           intron 9
          Length = 570

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
 Frame = -3

Query: 452 RPRSTAACPCDSRAKTGRSDRTGSPRRRAATVPPADPDSLS-TLNLVTHPTLVPRTQYSR 276
           R RST+  P   R +     R+ SPR R+ +  P     +S  L     P   P      
Sbjct: 486 RRRSTSRSPDGYRRRLRDGSRSQSPRHRSRSQSPRKRQPISQDLKSRLGPQRSPIRGGRT 545

Query: 275 SGTGST*PGYIPALRGKRG 219
           S   S  P + P+  GKRG
Sbjct: 546 SPAESLSPSHSPSPPGKRG 564


>At4g32640.1 68417.m04646 sec23/sec24 transport protein-related
          Length = 1069

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 617 PELRHCRSDPHPMGAHGLCVNKFPITGFT 531
           P   + R+ P P+G+H L  N  P+T FT
Sbjct: 227 PSAPYARTPPQPLGSHSLSGNP-PLTPFT 254


>At2g36350.1 68415.m04461 protein kinase, putative similar to
           protein kinase KIPK (KCBP-interacting protein kinase)
           [Arabidopsis thaliana] gi|7716430|gb|AAF68383
          Length = 949

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 369 RCHCAACGPGLTKHPKPGHASYSGTKNPVQPERDRE 262
           +CHCA        HP P + S++  KN V  E D+E
Sbjct: 400 KCHCAVKSTSTENHP-PSNTSHTTDKN-VSIEADQE 433


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,249,332
Number of Sequences: 28952
Number of extensions: 326686
Number of successful extensions: 972
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)