Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00467
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...   130   2e-31
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...   129   5e-31
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   2.2  
SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces p...    27   2.2  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    26   5.0  

>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score =  130 bits (315), Expect = 2e-31
 Identities = 57/85 (67%), Positives = 70/85 (82%)
 Frame = -1

Query: 517 KTCSYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKL 338
           K  +YE IK  +K A+EGP+KG+LGYTED VVS+DF GD+HSSIFDA+AGI L+  FVKL
Sbjct: 251 KPTNYEDIKAAIKAASEGPMKGVLGYTEDSVVSTDFCGDNHSSIFDASAGIQLSPQFVKL 310

Query: 337 ISWYDNEYGYSSRVIDLIKYIQSKD 263
           +SWYDNE+GYS RV+DL+ Y  SKD
Sbjct: 311 VSWYDNEWGYSHRVVDLVAYTASKD 335



 Score =  111 bits (267), Expect = 1e-25
 Identities = 57/80 (71%), Positives = 60/80 (75%)
 Frame = -2

Query: 750 GLMXXXXXXXXXXXXVDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPALNGKLTGMA 571
           GLM            VDGPS K WR GRGA  NIIP+STGAAKAVGKVIPALNGKLTGMA
Sbjct: 173 GLMTTVHATTATQKTVDGPSKKDWRGGRGASANIIPSSTGAAKAVGKVIPALNGKLTGMA 232

Query: 570 FRVPVANVSVVDLTVRLGKP 511
           FRVP  +VSVVDLTV+L KP
Sbjct: 233 FRVPTPDVSVVDLTVKLAKP 252


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score =  129 bits (311), Expect = 5e-31
 Identities = 56/85 (65%), Positives = 70/85 (82%)
 Frame = -1

Query: 517 KTCSYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKL 338
           K  +YE IK  +K A+EGP+KG+LGYTED VVS+DF GD+HSSIFDA+AGI L+  FVKL
Sbjct: 251 KPTNYEDIKAAIKAASEGPMKGVLGYTEDAVVSTDFCGDNHSSIFDASAGIQLSPQFVKL 310

Query: 337 ISWYDNEYGYSSRVIDLIKYIQSKD 263
           +SWYDNE+GYS RV+DL+ Y  +KD
Sbjct: 311 VSWYDNEWGYSRRVVDLVAYTAAKD 335



 Score =  111 bits (267), Expect = 1e-25
 Identities = 57/80 (71%), Positives = 60/80 (75%)
 Frame = -2

Query: 750 GLMXXXXXXXXXXXXVDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPALNGKLTGMA 571
           GLM            VDGPS K WR GRGA  NIIP+STGAAKAVGKVIPALNGKLTGMA
Sbjct: 173 GLMTTVHATTATQKTVDGPSKKDWRGGRGASANIIPSSTGAAKAVGKVIPALNGKLTGMA 232

Query: 570 FRVPVANVSVVDLTVRLGKP 511
           FRVP  +VSVVDLTV+L KP
Sbjct: 233 FRVPTPDVSVVDLTVKLAKP 252


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
 Frame = +2

Query: 422 HNLIFSIPE---NALQRTFSCLLDLLLDGF 502
           +++I  IPE   N++Q T  C+LD +LD F
Sbjct: 174 NDMIDEIPEKLENSIQTTIDCVLDFVLDVF 203


>SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +2

Query: 194 KPIDNLDVHVEKYPYIHTLDQSLIFRLNVLDEINDS 301
           K + N+  ++ K+P+    D+SL   L  LDE++++
Sbjct: 197 KSVPNVSYYIYKFPFKILADKSLEDNLKYLDELDEN 232


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 367 ISLNDNFV-KLISWYDNEYGYSSRVIDLIKYI 275
           +  +DNFV K I+WY N   YSS +    +Y+
Sbjct: 307 LGYSDNFVNKGINWYYNWGSYSSGLSSSFEYV 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,683,268
Number of Sequences: 5004
Number of extensions: 51411
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)