Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00467
         (751 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)             119   3e-27
SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_33814| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_25372| Best HMM Match : DoxX (HMM E-Value=0.96)                     28   7.0  
SB_502| Best HMM Match : DNA_pol3_alpha (HMM E-Value=0)                28   7.0  

>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score =  119 bits (286), Expect = 3e-27
 Identities = 60/81 (74%), Positives = 63/81 (77%)
 Frame = -2

Query: 750  GLMXXXXXXXXXXXXVDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPALNGKLTGMA 571
            GLM            VDGPS K WRDGRGA QN+IPASTGAAKAVGKVIP +NGKLTGMA
Sbjct: 946  GLMTTIHAYTATQKTVDGPSAKNWRDGRGAHQNVIPASTGAAKAVGKVIPEVNGKLTGMA 1005

Query: 570  FRVPVANVSVVDLTVRLGKPA 508
            FRVPVA+VSVVDLT RL KPA
Sbjct: 1006 FRVPVADVSVVDLTCRLKKPA 1026



 Score =  115 bits (276), Expect = 5e-26
 Identities = 54/85 (63%), Positives = 66/85 (77%), Gaps = 1/85 (1%)
 Frame = -1

Query: 517  KTCSYEAIKQKVKEAAEGPLKG-ILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVK 341
            K   YE IK  VK+A+E    G  LGYTEDQVVS+DFIG+  SS+FDA AGI LND FVK
Sbjct: 1024 KPAKYEEIKAVVKKASESKEMGQYLGYTEDQVVSTDFIGERVSSVFDARAGIQLNDKFVK 1083

Query: 340  LISWYDNEYGYSSRVIDLIKYIQSK 266
            L++WYDNEYGYS RV+DL++Y+ S+
Sbjct: 1084 LVTWYDNEYGYSHRVVDLMRYMASR 1108


>SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 593

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -2

Query: 663 AQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVS 544
           AQ N I    G    +G  I  +NG + GMA    +AN+S
Sbjct: 374 AQMNGIAGMNGIGNGMGNGIGIMNGNMNGMAGISALANLS 413


>SB_33814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 282

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -2

Query: 663 AQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVS 544
           AQ N I    G    +G  I  +NG + GMA    +AN+S
Sbjct: 63  AQMNGIAGMNGIGNGMGNGIGIMNGNMNGMAGISALANLS 102


>SB_25372| Best HMM Match : DoxX (HMM E-Value=0.96)
          Length = 244

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 514 TCSYEAIKQKVKEAAEGPLKGILGYTEDQV 425
           T S++A K  VK+  E PL   L YT DQ+
Sbjct: 164 TISFQAYKTWVKQHGEEPLLPGLNYTNDQL 193


>SB_502| Best HMM Match : DNA_pol3_alpha (HMM E-Value=0)
          Length = 428

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = -2

Query: 672 GRGAQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKPAAMKPS 493
           GR A   II   T AAKAV + +  + GK  G+A +  ++ +   ++ + L K    +P+
Sbjct: 139 GRDAVSQIITFGTMAAKAVVRDVARVQGKAFGLADK--LSKLIPFEVGITLSKAMEQEPA 196


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,334,786
Number of Sequences: 59808
Number of extensions: 372732
Number of successful extensions: 973
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)