Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00466
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    29   0.45 
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    27   1.8  
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom...    26   4.2  
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo...    26   5.5  
SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   5.5  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    25   9.7  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 255 SNGPDMGRKIPNRIPVRDENDCDTRAYIKDDSVKIVTLMSAPI-IPNSA 398
           S  P  G ++PN      +N+ + +  +K+DS K     SAPI +P S+
Sbjct: 31  SISPSSGSELPNFKTTISQNNEEVKTSLKEDSSKFHPSASAPIFVPTSS 79


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = +3

Query: 282 IPNRIPVRDENDCDTRAYIKDDSVKIVTLMSAPIIPNSARDITRIVNERVGMV 440
           +P  IPV  E+  DT+A +K  S + +T +   +I N+  DI R + E +  +
Sbjct: 173 LPQIIPVVSESMWDTKAEVKKQSKETMTKV-CTLIANA--DIDRFIPELINCI 222


>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 541 LLTGTYNDGLARGFPQQATSYGSAFQVRLDRGLRQ 645
           +LTG YNDG+  G     T    A Q++   G  Q
Sbjct: 229 ILTGKYNDGIPEGSRLSTTFTSLAGQLQTPEGKTQ 263


>SPCC594.04c |||steroid oxidoreductase superfamily
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +1

Query: 82  KYPYSDLPYIGQYKLLKLPFTGKLIEHVDYWGEGSIVNGGLYS 210
           K+  +  PY+ Q   LKL FTGKL     Y+     V G L S
Sbjct: 12  KWKVAVSPYLYQLSNLKLLFTGKLNFADFYYNTNPFVVGLLLS 54


>SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +3

Query: 219 QLLQREPTVPRGSNGPDMGRKIPNRIPVRDEND---CDTRAYIKDDSVK 356
           +L   +P +  G  GP +       IPV+++ D   C    Y K+D ++
Sbjct: 26  KLTSNDPMILSGFRGPRVSHLTIGMIPVKNDEDVLKCMDFLYNKEDEIR 74


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -1

Query: 356 FDRVILDVSPGVAVVFVAHRDPVGDLATHVGPV 258
           F  + L  S  + +V + HR+P+  L TH   +
Sbjct: 174 FKNLALASSHNIHIVDLNHRNPIDSLTTHTSMI 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,695,536
Number of Sequences: 5004
Number of extensions: 55698
Number of successful extensions: 165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)