Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00466
         (659 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0785 - 24563310-24565004,24565302-24565384,24565484-245660...    30   1.9  
07_01_0245 - 1803170-1803887,1803971-1804641                           29   2.5  
08_02_0270 + 15108178-15108587,15108678-15108774,15109445-151094...    29   3.3  
06_03_0784 - 24557089-24557198,24557296-24560725                       29   3.3  
08_02_1340 - 26256768-26256999,26258105-26258774,26259273-262605...    29   4.3  
06_03_0783 - 24546403-24546765,24547202-24547262,24547899-245480...    29   4.3  
09_03_0029 + 11724581-11724583,11726413-11726610,11726874-117270...    28   7.6  

>06_03_0785 - 24563310-24565004,24565302-24565384,24565484-24566039,
            24566397-24566513,24566565-24567131,24568632-24568702,
            24569833-24569903,24570270-24570441,24571229-24572212,
            24573128-24574808
          Length = 1998

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -1

Query: 434  ADAFVNDSRNVSGAVRNDGRAHERHYFDRVILDVSP-GVAVVFVAHRDPVGDLATHV 267
            A  FV+  RN++ ++ + GR +      R    V   G  + ++ H D + DLA HV
Sbjct: 1338 AQGFVHSDRNINTSLEDIGRGYFNDLLQRSFFQVFRCGDQIYYIMH-DVLNDLALHV 1393


>07_01_0245 - 1803170-1803887,1803971-1804641
          Length = 462

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -1

Query: 269 VGPVATSWYCRFTL*QLRKPEYSPPLTILPSPQ*STCSISFPVKGSLSSLY 117
           V P  +  YC+  L +L       PL + PSP+ S      P  G+L++ +
Sbjct: 31  VHPSTSPCYCKIRLNKLPYQTADAPLLLPPSPEASAAPAPAPATGALAAAF 81


>08_02_0270 + 15108178-15108587,15108678-15108774,15109445-15109492,
            15109583-15109806,15111367-15111463,15111556-15111651,
            15112297-15112544,15112632-15112715,15112787-15113236,
            15114880-15115024,15115116-15115217,15115677-15115769,
            15117308-15117349,15119085-15119113,15119210-15119251,
            15119922-15119997,15120764-15120835,15121208-15121326,
            15121428-15121491,15121576-15123009
          Length = 1323

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 527  SRDSTPELAL*LGSQELNT-LRLYRHAVYDDHADAFVNDSRN 405
            +RD  P+ A+   S ++ T +R+Y   + DDH    +N   N
Sbjct: 1173 NRDEVPQTAINTPSMDIRTHIRMYGRHIRDDHTQTTMNPPAN 1214


>06_03_0784 - 24557089-24557198,24557296-24560725
          Length = 1179

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -1

Query: 434 ADAFVNDSRNVSGAVRNDGRAHERHYFDRVILD-VSPGVAVVFVAHRDPVGDLATH 270
           A  F+ D R+  G++++ GR++      R     +  G  V +V H D + DLA H
Sbjct: 470 AHEFIQDGRHTYGSLKSTGRSYFDELLSRSFFQALQYGGTVHYVMH-DLMNDLAVH 524


>08_02_1340 -
           26256768-26256999,26258105-26258774,26259273-26260555,
           26262403-26263499
          Length = 1093

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
 Frame = +3

Query: 210 GLPQLLQREPTVPRG-------SNGPDMGRKIPNRIPVRDENDCDTRAYIKD 344
           G    L+  PT PR          GP  G  +P+R P++D  DC+  A I+D
Sbjct: 396 GKAPCLEPPPTPPRAMAAAAAAEAGPSRGGCVPSRNPLKDPGDCEAVA-IRD 446


>06_03_0783 -
           24546403-24546765,24547202-24547262,24547899-24548004,
           24548118-24551600,24553134-24553179
          Length = 1352

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -1

Query: 434 ADAFVNDSRNVSGAVRNDGRAHERHYFDRVILD-VSPGVAVVFVAHRDPVGDLATH 270
           A  F+ D  +  G++R+ GR++    F R     +  G  V +V H D + DLA H
Sbjct: 505 AHEFIQDHGHTYGSLRSTGRSYFDELFSRSFFQALQYGGTVHYVMH-DLMNDLAFH 559


>09_03_0029 +
           11724581-11724583,11726413-11726610,11726874-11727038,
           11727217-11727283,11727645-11727812,11728070-11728194,
           11728288-11728446,11728552-11728714,11728795-11728920,
           11729000-11729083,11729161-11729528,11729613-11729813,
           11729909-11730018,11730113-11730197,11730360-11730488,
           11730580-11730667,11730805-11730893,11730968-11731267
          Length = 875

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +1

Query: 70  NVDLKYPYSDLPYIGQYKLLKLPFTGKLIEHVDYWGEGSIVNGGL 204
           N+D+ + Y+++    Q+ LL  P TGK  EH+ ++G    + G +
Sbjct: 629 NMDMDHIYTNMGVCPQHDLLWEPLTGK--EHLFFYGRLKNLKGAV 671


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,740,833
Number of Sequences: 37544
Number of extensions: 416615
Number of successful extensions: 1254
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)