Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00466
         (659 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25857| Best HMM Match : NAD_binding_1 (HMM E-Value=1.9e-07)         33   0.21 
SB_14231| Best HMM Match : RVT_1 (HMM E-Value=0.00045)                 31   0.63 
SB_2252| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.83 
SB_37260| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_13279| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_42660| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_43519| Best HMM Match : Pre-SET (HMM E-Value=0.37)                  28   5.9  
SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_25857| Best HMM Match : NAD_binding_1 (HMM E-Value=1.9e-07)
          Length = 166

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 18/42 (42%), Positives = 24/42 (57%)
 Frame = +2

Query: 485 GCRAKEQALVYCPD*ELPDYLQEPTMMDSHVAFLNKQLLMDL 610
           GCR K Q  +Y  + EL DY  + T+   HVAF   QLL ++
Sbjct: 63  GCRHKAQDYIY--ENELEDYAADGTISRLHVAFSRDQLLPEV 102


>SB_14231| Best HMM Match : RVT_1 (HMM E-Value=0.00045)
          Length = 519

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +1

Query: 61  YVTNVDLKYPYSDLPYIGQY-KLLKLPFTGKLIEH 162
           Y+ +VDLKY Y  +P   ++ K+LK  + GKL ++
Sbjct: 298 YMCSVDLKYAYYSVPIAPEHKKILKFSWRGKLYQY 332


>SB_2252| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +3

Query: 210 GLPQLLQREPTVPRGSNGPDMGRK 281
           G+P+LLQ+EPT P+  +GPD   K
Sbjct: 85  GVPELLQKEPTPPK--SGPDQNNK 106


>SB_37260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 818

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 263 ARHGSQDPQQDPGARRKRLRHPGLH-QG*LGQNSDAHERAHHSEQRQR 403
           ARHGSQD  QDPG +      PG H  G    N++ + R  H  +R+R
Sbjct: 595 ARHGSQDQAQDPGDQ------PGAHPSGQFLFNAECYHR--HCSRRRR 634


>SB_13279| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = +3

Query: 15  SEGAHDDGSTGQAPQLRDQRGPEVSVLRPAVHRAVQAAQAPLHWKA 152
           SE + DDG   +    RD+R P  SV R A    V+  + PL W A
Sbjct: 115 SEDSVDDGKKKKRKSFRDRRRPLFSVFRWA---GVREEKIPLPWVA 157


>SB_42660| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -1

Query: 167 STCSISFPVKGSLSSLYCPMYG-RSEYGYFRSTL 69
           S C +  P  GS   LY P  G RS Y YF  +L
Sbjct: 197 SRCQLHTPTSGSRCQLYTPTSGSRSLYTYFGESL 230


>SB_43519| Best HMM Match : Pre-SET (HMM E-Value=0.37)
          Length = 829

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +3

Query: 33  DGSTGQAPQLRDQRGPEV--SVLRPAVHRAV 119
           D  TG A  +RDQ GP+V  S+L P  H ++
Sbjct: 695 DQQTGPAMHVRDQEGPDVAISILPPDEHASL 725


>SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1276

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 324 TRAYIKDDSVKIVTLMSAPIIPNSARDITRIVNERVGMV 440
           T    KDDSV  V    + I+P S++ +T  V E  G V
Sbjct: 206 TTTETKDDSVTDVNTKKSAILPESSQAVTDQVEENDGSV 244


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,408,896
Number of Sequences: 59808
Number of extensions: 461840
Number of successful extensions: 1458
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1454
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)