Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00466
         (659 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21310-1|AAA62519.1|  997|Caenorhabditis elegans Hypothetical pr...    31   0.55 
AC024748-4|AAF60410.1|  251|Caenorhabditis elegans Hypothetical ...    31   0.72 
AC087794-1|AAG53701.2|  304|Caenorhabditis elegans Hypothetical ...    30   1.3  
U42830-2|AAC48274.1|  243|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U80450-5|AAB37830.1|  587|Caenorhabditis elegans Kinesin-like pr...    28   5.1  
AB032080-1|BAA92263.2|  587|Caenorhabditis elegans kinesin like ...    28   5.1  
Z71261-7|CAI70415.1|  570|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z71261-6|CAA95803.3|  578|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AF068721-1|AAC19263.1|  369|Caenorhabditis elegans Hypothetical ...    28   6.8  
AF036692-7|AAB88324.2|  203|Caenorhabditis elegans Hypothetical ...    28   6.8  
Z81532-3|CAC70088.2|  659|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z71178-1|CAA94874.1|  297|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome re...    27   8.9  

>U21310-1|AAA62519.1|  997|Caenorhabditis elegans Hypothetical
           protein F40H6.2 protein.
          Length = 997

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 198 GTVFG-LPQLLQREPTVPRGSNGPDMGRKIPNRI 296
           GTV+G LP  +  EPT P  S  P      PNRI
Sbjct: 604 GTVYGHLPNTIPEEPTKPSQSTSPSTPSTPPNRI 637


>AC024748-4|AAF60410.1|  251|Caenorhabditis elegans Hypothetical
           protein Y110A2AR.1 protein.
          Length = 251

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +1

Query: 103 PYIGQYKLLKLPFTGKLIEHVDYW---GEGSIVNGGLYSGFRNCY 228
           P IG +K+LK P   +LIE + YW   G   IV+  L + + +C+
Sbjct: 17  PVIGSFKVLKKPTKPRLIECMHYWTIYGSFLIVDWFLSTFYVSCF 61


>AC087794-1|AAG53701.2|  304|Caenorhabditis elegans Hypothetical
           protein Y32G9A.8 protein.
          Length = 304

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/51 (37%), Positives = 23/51 (45%)
 Frame = +1

Query: 505 SSGVLSRLGAARLLTGTYNDGLARGFPQQATSYGSAFQVRLDRGLRQGSYY 657
           ++GVLS  GA     G Y       FP Q       F V+LD+ LR G  Y
Sbjct: 200 TAGVLSIEGAQEEDAGVYRCEATNQFPVQIDGPEQHFAVKLDQELRIGDSY 250


>U42830-2|AAC48274.1|  243|Caenorhabditis elegans Hypothetical
           protein C53B7.3 protein.
          Length = 243

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 193 NGGLYSGFRNCYNVNRQYQEVATGPTWVARSPTGSRCATKTTATPG 330
           NGGLYS   N YN N QY   +     +  + +G+ C T  +   G
Sbjct: 56  NGGLYS---NTYNNNNQYDMNSQYGNQMGTTGSGTYCTTSYSCRSG 98


>U80450-5|AAB37830.1|  587|Caenorhabditis elegans Kinesin-like
           protein protein 15 protein.
          Length = 587

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 42  TGQAPQLRDQRGPEVSVLRPAVHRAVQAAQAPL 140
           TG+ P    QR    S L+P+V RA   AQ P+
Sbjct: 114 TGRPPPPSTQRSTATSSLKPSVTRARPVAQKPI 146


>AB032080-1|BAA92263.2|  587|Caenorhabditis elegans kinesin like
           protein-15 protein.
          Length = 587

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 42  TGQAPQLRDQRGPEVSVLRPAVHRAVQAAQAPL 140
           TG+ P    QR    S L+P+V RA   AQ P+
Sbjct: 114 TGRPPPPSTQRSTATSSLKPSVTRARPVAQKPI 146


>Z71261-7|CAI70415.1|  570|Caenorhabditis elegans Hypothetical
           protein F21C3.4b protein.
          Length = 570

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = -1

Query: 317 VVFVAHRDPVGDLATHVGPVATSWYCRFTL*QLRKPEYSPPLT 189
           + +V HR P+G+++ H+G    + Y +FT   +R+    PPL+
Sbjct: 522 IAWVVHRKPIGNVSLHIGKGGEA-YQQFTNGDIRE---LPPLS 560


>Z71261-6|CAA95803.3|  578|Caenorhabditis elegans Hypothetical
           protein F21C3.4a protein.
          Length = 578

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = -1

Query: 317 VVFVAHRDPVGDLATHVGPVATSWYCRFTL*QLRKPEYSPPLT 189
           + +V HR P+G+++ H+G    + Y +FT   +R+    PPL+
Sbjct: 530 IAWVVHRKPIGNVSLHIGKGGEA-YQQFTNGDIRE---LPPLS 568


>AF068721-1|AAC19263.1|  369|Caenorhabditis elegans Hypothetical
           protein ZK1055.5 protein.
          Length = 369

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 327 RAYIKDDSVKIVTLMSAPIIPNSARDITRIVNERVGMVVIYGM 455
           RAYI D   +   +    I+   ARD+ R+V++  G+ + Y M
Sbjct: 134 RAYIPDGEQRDYLMNKYNIVTWHARDVLRLVDDMSGISMHYAM 176


>AF036692-7|AAB88324.2|  203|Caenorhabditis elegans Hypothetical
           protein C44B12.1 protein.
          Length = 203

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 226 YNVNRQYQEVATGPTWVARSPTGSRCATKTTA 321
           YN N+QY   A GP+++ R     R A + TA
Sbjct: 107 YNNNQQYDAPAYGPSFIQRPRPFERQACRNTA 138


>Z81532-3|CAC70088.2|  659|Caenorhabditis elegans Hypothetical
           protein F36F2.6 protein.
          Length = 659

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 339 KDDSVKIVTLMSAPIIPNSARDITRIVNERVGMVVIY 449
           + D  ++ T   A I+P+   D+T +V  R G   +Y
Sbjct: 375 RTDIYRLCTQFGAVIVPDVTDDVTHVVGARYGTQKVY 411


>Z71178-1|CAA94874.1|  297|Caenorhabditis elegans Hypothetical
           protein B0024.1 protein.
          Length = 297

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 189 RQRGTVFGLPQLLQREPTVPRGSNGP 266
           ++R T  GLP   Q EPT P+   GP
Sbjct: 83  KRRSTFSGLPAWCQCEPTKPKCPRGP 108


>AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 1 protein.
          Length = 981

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 318 CDTRAYIKDDSVKIVTLMSAPIIPNSARD 404
           CD   YI DD +K  TL++  II +  +D
Sbjct: 417 CDRFLYINDDYIKAGTLLAIGIISSGIQD 445


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,271,024
Number of Sequences: 27780
Number of extensions: 331855
Number of successful extensions: 1016
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)