Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00466
         (659 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g04450.1 68414.m00437 p21-rho-binding domain-containing prote...    30   1.2  
At5g54730.1 68418.m06815 expressed protein                             28   4.8  
At5g51930.1 68418.m06442 glucose-methanol-choline (GMC) oxidored...    28   4.8  
At5g38150.1 68418.m04598 expressed protein                             28   4.8  
At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein ...    28   6.3  
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ...    27   8.4  
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein...    27   8.4  

>At1g04450.1 68414.m00437 p21-rho-binding domain-containing protein
           contains Pfam PF00786: P21-Rho-binding domain
          Length = 220

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 248 KR*QRARHGSQDPQQDPGARRKRL 319
           +R  R+RHGS D   DP  RR+R+
Sbjct: 129 RRHHRSRHGSIDSSNDPSVRRRRV 152


>At5g54730.1 68418.m06815 expressed protein
          Length = 763

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 223 CYNVNRQYQEVATGPTWVARSPTGSRCATKTTA 321
           C ++   Y  +A GP W+A S  GSR AT ++A
Sbjct: 222 CGSLGVGYGPLAVGPRWIAYS--GSRIATSSSA 252


>At5g51930.1 68418.m06442 glucose-methanol-choline (GMC)
           oxidoreductase family protein similar to mandelonitrile
           lyase from Prunus serotina [SP|P52706, SP|P52707];
           contains Pfam profile PF00732 GMC oxidoreductase
          Length = 582

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +1

Query: 175 GEGSIVNGGLYSGFRNCY--NVNRQYQEVATGPTWVAR 282
           G GS++NGG YS   N Y      + +EV     WV +
Sbjct: 149 GGGSVINGGFYSRAGNDYVEEAEWEMEEVEAAYEWVEK 186


>At5g38150.1 68418.m04598 expressed protein
          Length = 574

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 294 IPVRDENDCDTRAYIKDDSVKIVTLMSAPIIPNSARDITRIVNERV 431
           I  RDE  C  +  +++D VKI  L S  +I  S  ++  I  ER+
Sbjct: 294 IRARDETACLGKI-LREDDVKIEKLNSKILIEKSKLEVVSIAEERI 338


>At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein
            contains Pfam domain, PF00642: Zinc finger
            C-x8-C-x5-C-x3-H type (and similar)
          Length = 1230

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 7/89 (7%)
 Frame = -1

Query: 596  VAC*GKP------RASPSL*VPVSNRAAPSRDSTPELAL*LGSQELNTLRL-YRHAVYDD 438
            VAC GK       R  P +  P S    P    TP++    G+ + NT+R    H     
Sbjct: 779  VACSGKVEDGNSVRPQPQVSCPASISVVPGHVVTPDVRETPGTDQYNTVRADGNHNTTKT 838

Query: 437  HADAFVNDSRNVSGAVRNDGRAHERHYFD 351
              D     S +++G+V       E H+ D
Sbjct: 839  LEDETNGGSVSINGSVHAPNLNQESHFLD 867


>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
           protein low similarity to glycine-rich RNA-binding
           protein [Euphorbia esula] GI:2645699; contains
           INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
           recognition motif) (RRM) domain
          Length = 337

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
 Frame = -1

Query: 461 YRHAVYD-DHAD-----AFVNDSRNVSGAVRNDGRAHERHYFDRVILDVSPG 324
           Y+  V+D D  D     ++V++ R ++G   ++GR+ E    D  ILD   G
Sbjct: 165 YKERVFDGDEGDWRGDRSYVDNGRGINGTSAHEGRSQETKREDSTILDGGRG 216


>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
           contains PF01422: NF-X1 type zinc finger
          Length = 912

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = -3

Query: 330 PGCRSRFRRAPGSC-WGSCDPCRARC 256
           P CR    + P  C +G+C PCR  C
Sbjct: 492 PLCRHGQNQKPHKCHYGACPPCRLLC 517


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,442,817
Number of Sequences: 28952
Number of extensions: 309165
Number of successful extensions: 956
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)