Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00465
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo...    70   4e-13
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    31   0.18 
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    28   1.7  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    27   2.9  
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo...    26   5.1  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    26   6.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   8.9  
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch...    25   8.9  

>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
           Aif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 69.7 bits (163), Expect = 4e-13
 Identities = 34/85 (40%), Positives = 50/85 (58%)
 Frame = +1

Query: 490 CYSGRRTSGATCAESLRSEGFKGRITVIAKEPHLPYDRIKVSKIGTVTDIEKLQARSQKY 669
           C  G     +  AE LR + FKG+IT+  +E  +PYDR K+SK   + DI KL  RS++Y
Sbjct: 161 CIIGGGKGASVAAEYLREKNFKGKITIFTREDEVPYDRPKLSK-SLLHDISKLALRSKEY 219

Query: 670 YDDANIEIMKGVEATKIEPNDKLVH 744
           YDD +I      + TKI+  +K ++
Sbjct: 220 YDDLDISFHFNTDVTKIDLAEKKIY 244



 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
 Frame = +2

Query: 251 SPLINGAL-GDGRLRCPWHGACFNLKTGDIEDFPGFDSLPCYQVTVTDKGEVKVRAKISD 427
           +PL  G +  DG + CPWHGACFN  TGD+ED P   +L  +   VT++G+  +  ++ D
Sbjct: 66  APLAKGVVTSDGHIVCPWHGACFNAATGDVEDTPAIAALRTF--PVTEEGDGSLWIEVED 123

Query: 428 LKTN 439
              N
Sbjct: 124 KNDN 127


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
 Frame = +3

Query: 63   NENRGTISRMES-TNNYVESVVCQENDLKDNEMKVFDIGEDGKVLVVKQKGEFSAI 227
            N+ R  I+ +ES  +NY E+ + QE +L+   + + D  +DG++  + ++ E + I
Sbjct: 947  NKFRERIAELESHLSNYAEAKLAQERELEQTRVLISDQSQDGELKELLEEKENALI 1002


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +1

Query: 559 RITVIAKEPHLPYDRIKVSKIGTVTDIEKLQARSQKYYDDANIEIMKGVEATKIEPNDKL 738
           R+     E  L  D+ K +    + ++E L  R+Q   DD         E TKI  ND +
Sbjct: 576 RLASAKLERRLQIDKSKAAHDNALNELETLLYRAQAMVDDDEFLEFANPEETKILKNDSV 635


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -1

Query: 149 VFEVVLLT-ND*FDVIVCRFHSGYGSAV 69
           VF++ + T  D   +++CRF  GYG+ V
Sbjct: 216 VFQIAVATAQDIQTIMICRFFGGYGACV 243


>SPAPB17E12.10c |||SAM-dependent
           methyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
 Frame = +2

Query: 359 SLPCYQVTVTDKGEVKVRAKISDLKTNKRIKDMGVVSP-CEXXXXXXXXXXRRALHVLNH 535
           S+P  Q    ++ + K +AKI DL  +  + D+G   P  +            A+    H
Sbjct: 155 SIPYLQSVFEEERDTKEKAKIEDLSADVIMSDLGPPFPMVQGFEFWISKLPYLAMQTNEH 214

Query: 536 YAAKD 550
            A KD
Sbjct: 215 LAVKD 219


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -2

Query: 445  TLVRFEVTYLCSYLYFSFIGYGNLIARQRIKTRKIFN 335
            TL+  E+ +L  Y  FSF  +GN++A    K+RK+ N
Sbjct: 1293 TLLNTEL-HLTKYYGFSFFRHGNIVAYG--KSRKVAN 1326


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -3

Query: 288  SLPSPSAPLMRGLHNAXTSFR*RRILPSVSLQAPSRLRRCRKPSS 154
            S P+P AP+ + L  A  +     ++PSV+ Q PS +     PSS
Sbjct: 1474 SAPAPPAPVSQ-LPPAVPNVPVPSMIPSVAQQPPSSVAPATAPSS 1517


>SPBC365.02c |cox10||protoheme IX
           farnesyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 432 KRTSV*RIWVWSLLVKVPLLL*WA 503
           KR S+   WV SL+  +P L+ WA
Sbjct: 208 KRISIVNTWVGSLVGAIPPLMGWA 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,006,011
Number of Sequences: 5004
Number of extensions: 59796
Number of successful extensions: 177
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)