Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00465
(761 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0973 - 21963754-21963936,21964089-21964383,21964504-219646... 30 2.3
10_08_0971 - 21949721-21949936,21950051-21950484,21950599-219507... 29 3.1
03_06_0373 + 33468711-33468917,33469020-33469217 29 3.1
03_06_0371 + 33435936-33436472,33436554-33436741,33437146-334372... 29 3.1
03_06_0370 + 33431696-33432217,33432521-33432796,33433003-334331... 29 3.1
03_06_0369 + 33425251-33425778,33425864-33426051,33426152-334262... 29 4.0
02_02_0662 - 12736904-12737214,12737632-12737914 29 4.0
02_02_0678 + 12868735-12868739,12869576-12869795,12870280-128704... 28 7.1
01_06_1419 + 37225007-37225011,37225633-37225852,37226347-372265... 28 9.3
>10_08_0973 -
21963754-21963936,21964089-21964383,21964504-21964616,
21964729-21964913,21965054-21965201,21965297-21965575,
21965657-21965761,21965936-21966178,21966426-21966486,
21966734-21966792
Length = 556
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Frame = +2
Query: 254 PLINGALGDGRLRCPWHGACFNLKTGDIEDFPG-------FDSLPCYQ 376
PL G++ +GR++CP+HG ++ G E P SLPC++
Sbjct: 282 PLHLGSVNEGRIQCPYHGWEYS-TDGKCEKMPSTKMLNVRIRSLPCFE 328
>10_08_0971 -
21949721-21949936,21950051-21950484,21950599-21950791,
21950909-21951007,21951114-21951191,21951275-21951669,
21954317-21954482,21954840-21954927,21955015-21955127,
21955242-21955426,21955840-21955987,21956071-21956349,
21956425-21956529,21956892-21957137,21957367-21957408,
21957539-21957613
Length = 953
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Frame = +2
Query: 254 PLINGALGDGRLRCPWHGACFNLKTGDIEDFPG-------FDSLPCYQ 376
PL G++ +GR++CP+HG ++ G E P SLPC++
Sbjct: 282 PLHLGSVSEGRIQCPFHGWEYS-TDGKCEKMPATKLLNVRIRSLPCFE 328
>03_06_0373 + 33468711-33468917,33469020-33469217
Length = 134
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +2
Query: 251 SPLINGAL-GDGRLRCPWHGACFN 319
+PL G + G GRL+C +HG CF+
Sbjct: 29 APLSEGRVDGKGRLQCAYHGWCFD 52
>03_06_0371 +
33435936-33436472,33436554-33436741,33437146-33437245,
33437360-33437545,33438977-33439186,33439772-33439959,
33440083-33440341
Length = 555
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +2
Query: 251 SPLINGAL-GDGRLRCPWHGACFN 319
+PL G + G GRL+C +HG CF+
Sbjct: 139 APLSEGRVDGKGRLQCAYHGWCFD 162
>03_06_0370 +
33431696-33432217,33432521-33432796,33433003-33433183,
33433253-33433455,33433545-33433732,33433844-33434105
Length = 543
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +2
Query: 251 SPLINGAL-GDGRLRCPWHGACFN 319
+PL G + G GRL+C +HG CF+
Sbjct: 134 APLSEGRVDGKGRLQCAYHGWCFD 157
>03_06_0369 +
33425251-33425778,33425864-33426051,33426152-33426251,
33426366-33426578,33426616-33426822,33426908-33427095,
33427234-33427492
Length = 560
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +2
Query: 251 SPLINGALGD-GRLRCPWHGACFN 319
+PL G + D GRL+C +HG CF+
Sbjct: 136 APLSEGRVDDKGRLQCVYHGWCFD 159
>02_02_0662 - 12736904-12737214,12737632-12737914
Length = 197
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/37 (43%), Positives = 16/37 (43%)
Frame = +1
Query: 457 GCGLSL*RFRCCYSGRRTSGATCAESLRSEGFKGRIT 567
GCG R GRR SG TC E L G G T
Sbjct: 156 GCGAVYSARRLAGRGRRCSGPTCRERLDGGGASGHQT 192
>02_02_0678 +
12868735-12868739,12869576-12869795,12870280-12870430,
12870853-12871058,12871166-12871219
Length = 211
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +1
Query: 559 RITVIAKEPHLPYDRIKVSKIGTVTDIEKLQARSQKYYDDANIEIMKGVEATKIEPNDKL 738
R + K PH+P ++KV +G +E+ + Y D +E +K K+ N KL
Sbjct: 47 RFSGSVKLPHIPRPKLKVCMLGDAQHVEEAEKMGLDYMD---VEALK-----KMNKNKKL 98
Query: 739 V 741
V
Sbjct: 99 V 99
>01_06_1419 +
37225007-37225011,37225633-37225852,37226347-37226516,
37226615-37226676,37227002-37227207,37227581-37227634
Length = 238
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +1
Query: 559 RITVIAKEPHLPYDRIKVSKIGTVTDIEKLQARSQKYYDDANIEIMKGVEATKIEPNDKL 738
R + K PH+P ++KV +G +E+ + Y D +E +K K+ N KL
Sbjct: 47 RFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKMGLDYMD---VEALK-----KMNKNKKL 98
Query: 739 V 741
V
Sbjct: 99 V 99
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,947,794
Number of Sequences: 37544
Number of extensions: 405346
Number of successful extensions: 1040
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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