Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00465
         (761 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53186| Best HMM Match : Rieske (HMM E-Value=1.2e-20)                86   3e-17
SB_13127| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   4e-04
SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)                     31   1.4  
SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   2.4  
SB_37998| Best HMM Match : zf-FPG_IleRS (HMM E-Value=3.3)              29   4.1  
SB_37102| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     29   5.5  
SB_15409| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_48734| Best HMM Match : DUF237 (HMM E-Value=5.2)                    28   9.5  
SB_43735| Best HMM Match : PHD (HMM E-Value=5.6e-06)                   28   9.5  
SB_21209| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_53186| Best HMM Match : Rieske (HMM E-Value=1.2e-20)
          Length = 216

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 37/55 (67%), Positives = 47/55 (85%)
 Frame = +2

Query: 251 SPLINGALGDGRLRCPWHGACFNLKTGDIEDFPGFDSLPCYQVTVTDKGEVKVRA 415
           +PL +GAL  GR+RCPWHGACFN+KTGDIEDFPG DS+P ++VTV+ + +V VRA
Sbjct: 160 APLASGALCRGRVRCPWHGACFNVKTGDIEDFPGLDSIPTFEVTVSGE-DVIVRA 213



 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 24/48 (50%), Positives = 34/48 (70%)
 Frame = +3

Query: 111 VESVVCQENDLKDNEMKVFDIGEDGKVLVVKQKGEFSAIGTKXTHYGA 254
           VE+VV + +DL+D +MK  ++ E  K L+VK+ G F A+G K THYGA
Sbjct: 113 VEAVVAKVSDLQDGQMKTVELAEGKKALLVKENGTFYAVGHKCTHYGA 160


>SB_13127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 50

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = +1

Query: 559 RITVIAKEPHLPYDR-IKVSKIGTVTDIEKLQARSQKYYDDANIEIMKG 702
           R+ ++AKEPHLPYDR I   K+G   D   L+ RS  ++ +  IE + G
Sbjct: 2   RVLLVAKEPHLPYDRPILSKKLGAAAD--DLKLRSADFFAEKGIEFLAG 48


>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
          Length = 783

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +2

Query: 251 SPLINGALGDGRLRCPWHGACFNL-KTGDIEDFPGFDSLPCYQVTVTDKGEVKVRAK 418
           S L+ GAL  GRL+    GA F   KTG ++ F   D    + + V    E+K+  K
Sbjct: 12  SLLVRGALNSGRLKLHKSGAVFKASKTGRVDQFSKDDIESAHWLRVACGQELKIVLK 68


>SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +2

Query: 293 CPWHGACFNLKTGD 334
           CPWH   FNLKTG+
Sbjct: 131 CPWHNYDFNLKTGE 144


>SB_37998| Best HMM Match : zf-FPG_IleRS (HMM E-Value=3.3)
          Length = 233

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 7   WEAPTRDHILPTVAKVEAAMKTAEPYPEWNLQTITSNQS 123
           W+A   DH L T  KVE   KT E   + N +T+ S  S
Sbjct: 191 WKAWPYDHCLRTACKVEQFEKTVEKETKCNDKTLLSPPS 229


>SB_37102| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 618

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 478 FTRRDHTHILYTLVRFEVTYLCSYLYFSFIGYGNL 374
           FTRRD  H    + + E  + C+    SFI YG+L
Sbjct: 489 FTRRDEMHTHMYIHKGEKPFKCTQCPASFIRYGHL 523


>SB_15409| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 419

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
 Frame = +1

Query: 451 GYGCGLSL*RFRCCYSGRRTSG---ATCAESLRSEG 549
           G GCG    R R CY+G  T G    TC +  R+ G
Sbjct: 230 GKGCGTCGKRCRTCYAGCGTCGKGWGTCGKGCRTSG 265


>SB_48734| Best HMM Match : DUF237 (HMM E-Value=5.2)
          Length = 407

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 460 CGLSL*RFRCCYSGRRTSGATCAESLRSEGF 552
           CG+ L   +C Y  R T   T AESL  +GF
Sbjct: 357 CGIGLCEIKCPYKHRNT---TIAESLNDKGF 384


>SB_43735| Best HMM Match : PHD (HMM E-Value=5.6e-06)
          Length = 772

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 460 CGLSL*RFRCCYSGRRTSGATCAESLRSEGF 552
           CG+ L   +C Y  R T   T AESL  +GF
Sbjct: 600 CGIGLCEIKCPYKHRNT---TIAESLNDKGF 627


>SB_21209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/29 (34%), Positives = 21/29 (72%)
 Frame = +3

Query: 87  RMESTNNYVESVVCQENDLKDNEMKVFDI 173
           R+E   +Y ++++ ++N +KDN+ KV +I
Sbjct: 182 RLEGKLSYEDAILARQNLIKDNKQKVSEI 210


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,936,896
Number of Sequences: 59808
Number of extensions: 464144
Number of successful extensions: 1407
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1405
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)