Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00465
         (761 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    23   4.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   5.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   7.1  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    21   9.4  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    21   9.4  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    21   9.4  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    21   9.4  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    21   9.4  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    21   9.4  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    21   9.4  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   9.4  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 14/43 (32%), Positives = 17/43 (39%)
 Frame = -2

Query: 478 FTRRDHTHILYTLVRFEVTYLCSYLYFSFIGYGNLIARQRIKT 350
           FTR  H      L   E  Y CS+    F+   NL    R+ T
Sbjct: 19  FTRDHHLKTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLRVHT 61


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +2

Query: 203 TEGRILRYRNEVXALWSPLINGALGDGRLR 292
           TE   L   + V   W  L+N  +G+G  R
Sbjct: 603 TEEDALNLSSAVWFAWGVLLNSGIGEGTPR 632


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -1

Query: 716 LVASTPFIISILASS*YFCDLACSFSISVTVPILD 612
           ++  T  ++ +L     F  +  +FSI VTV +L+
Sbjct: 292 IIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLN 326


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 94  SIRDMVPRFSLQLPPWP 44
           SI++ VPRF    PP P
Sbjct: 140 SIQEQVPRFRYIGPPTP 156


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 94  SIRDMVPRFSLQLPPWP 44
           SI++ VPRF    PP P
Sbjct: 140 SIQEQVPRFRYIGPPTP 156


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 94  SIRDMVPRFSLQLPPWP 44
           SI++ VPRF    PP P
Sbjct: 140 SIQEQVPRFRYIGPPTP 156


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 94  SIRDMVPRFSLQLPPWP 44
           SI++ VPRF    PP P
Sbjct: 140 SIQEQVPRFRYIGPPTP 156


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 94  SIRDMVPRFSLQLPPWP 44
           SI++ VPRF    PP P
Sbjct: 140 SIQEQVPRFRYIGPPTP 156


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 94  SIRDMVPRFSLQLPPWP 44
           SI++ VPRF    PP P
Sbjct: 144 SIQEQVPRFRYIGPPTP 160


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 94  SIRDMVPRFSLQLPPWP 44
           SI++ VPRF    PP P
Sbjct: 140 SIQEQVPRFRYIGPPTP 156


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 94  SIRDMVPRFSLQLPPWP 44
           SI++ VPRF    PP P
Sbjct: 365 SIQEQVPRFRYIGPPTP 381


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,480
Number of Sequences: 438
Number of extensions: 4732
Number of successful extensions: 28
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)