Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00465
(761 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g25650.2 68417.m03694 Rieske [2Fe-2S] domain-containing prote... 31 1.1
At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing prote... 31 1.1
At3g09940.1 68416.m01190 monodehydroascorbate reductase, putativ... 30 1.5
At3g21120.1 68416.m02669 F-box family protein similar to GP:2019... 29 3.4
At5g64480.1 68418.m08101 expressed protein 28 5.9
At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) / chlorop... 28 5.9
At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) / chlorop... 28 5.9
At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) / chlorop... 28 5.9
>At4g25650.2 68417.m03694 Rieske [2Fe-2S] domain-containing protein
similar to cell death suppressor protein lls1 from Zea
mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
[2Fe-2S] domain
Length = 559
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +2
Query: 251 SPLINGALGD-GRLRCPWHGACFNLKTGDIEDFP 349
+PL +G + GRL+C +HG CFN +GD + P
Sbjct: 132 APLSDGRIDQWGRLQCVYHGWCFN-GSGDCKLIP 164
>At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing protein
similar to cell death suppressor protein lls1 from Zea
mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
[2Fe-2S] domain
Length = 536
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +2
Query: 251 SPLINGALGD-GRLRCPWHGACFNLKTGDIEDFP 349
+PL +G + GRL+C +HG CFN +GD + P
Sbjct: 132 APLSDGRIDQWGRLQCVYHGWCFN-GSGDCKLIP 164
>At3g09940.1 68416.m01190 monodehydroascorbate reductase, putative
similar to monodehydroascorbate reductase (NADH)
GB:JU0182 (Cucumis sativus)
Length = 441
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 499 GRRTSGATCAESLRSEGFK-GRITVIAKEPHLPYDRIKVSKI 621
G +G A ++G K G + +I+KEP P++R +++K+
Sbjct: 13 GGGVAGGYAAREFSNQGLKPGELAIISKEPVPPFERPELTKV 54
>At3g21120.1 68416.m02669 F-box family protein similar to
GP:20197985 F-box protein family, AtFBX9 (GP:20197985)
{Arabidopsis thaliana}; contains weak hit to Pfam
PF00646: F-box domain
Length = 367
Score = 29.1 bits (62), Expect = 3.4
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 10/77 (12%)
Frame = -1
Query: 230 SDSGEFSLLFHYKH-----LPVFADVENLHLVVFEVVLLTND*FDVIVCRFHS-GYGSA- 72
SD F L F + LP+ ADV+NLHL V V+ +T + + +C F + G G+
Sbjct: 220 SDDRRFLLSFDFSRERFQCLPLPADVKNLHLTV--VLSVTRE--EQQLCMFATLGAGNVY 275
Query: 71 ---VFIAASTLATVGRI 30
VF+A T T G +
Sbjct: 276 KLDVFVATKTEETTGEL 292
>At5g64480.1 68418.m08101 expressed protein
Length = 184
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/41 (31%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Frame = +3
Query: 90 MESTNNYVESVVCQENDLKDNEMKV--FDIGEDGKVLVVKQ 206
M+ + + + C+ DLK++EMK+ IGE+ K+++V++
Sbjct: 87 MKKSGEILWAEFCRHMDLKEDEMKIKWNKIGEEEKLVLVRE 127
>At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 433
Score = 28.3 bits (60), Expect = 5.9
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2
Query: 254 PLINGALGDGRLRCPWHG 307
PL G + +GR++CP+HG
Sbjct: 268 PLDLGTVNEGRIQCPYHG 285
>At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 511
Score = 28.3 bits (60), Expect = 5.9
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2
Query: 254 PLINGALGDGRLRCPWHG 307
PL G + +GR++CP+HG
Sbjct: 268 PLDLGTVNEGRIQCPYHG 285
>At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 536
Score = 28.3 bits (60), Expect = 5.9
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2
Query: 254 PLINGALGDGRLRCPWHG 307
PL G + +GR++CP+HG
Sbjct: 268 PLDLGTVNEGRIQCPYHG 285
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,955,431
Number of Sequences: 28952
Number of extensions: 324170
Number of successful extensions: 899
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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