Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00464X
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    26   3.5  
SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp...    26   4.6  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    25   6.1  
SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|c...    25   6.1  

>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -1

Query: 568 KADKKTD*INHKYSFNLLTYCQGFPKPSVSQKNDFHFYFITFLGV*TSS 422
           KA+K++    H Y   L  Y +     +     DF+ YF+ +LG+  SS
Sbjct: 88  KANKRSIVYMHGYGAGLGFYFRNMDGLTKGVTKDFNSYFVDWLGMGNSS 136


>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 552 LIKLTTSIVLICSPTVKG-FRSHLCLKRMIFTFISLRSWVYELH 424
           LIK TTS+ LIC  +V     S  C    IF   +L S V+ LH
Sbjct: 235 LIKCTTSVHLICMCSVPSTLFSRDC--EQIFWLENLASAVFSLH 276


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 89  KKLVSKIGHD*QFFLDNTLHFQKMPR 166
           KKL S +    Q  L+N LHF   P+
Sbjct: 610 KKLASALASQDQLVLENALHFVNPPK 635


>SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 313

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -2

Query: 495 RSHLCLKRMIFTFI 454
           R +LC+KR+I+TFI
Sbjct: 88  RVNLCIKRLIYTFI 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,245,463
Number of Sequences: 5004
Number of extensions: 45966
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)