Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00464X
         (583 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125954-5|AAD14708.2|  338|Caenorhabditis elegans Seven tm rece...    31   0.60 
AC006769-6|AAF60582.1|  274|Caenorhabditis elegans Hypothetical ...    31   0.60 
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical...    28   4.2  
AL110471-3|CAB63308.1|  818|Caenorhabditis elegans Hypothetical ...    27   9.7  
AL034364-6|CAA22254.2|  818|Caenorhabditis elegans Hypothetical ...    27   9.7  

>AF125954-5|AAD14708.2|  338|Caenorhabditis elegans Seven tm
           receptor protein 120 protein.
          Length = 338

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = -2

Query: 537 TSIVLICSPTVKGFRSHLCLKRMIFTFISLRSWVYELHH-VMHLFGKSDVMYGDTKFLIL 361
           T + LI +   + F S+  L      F  L + V  L   +MH+ G   ++Y  T FL +
Sbjct: 24  TLLFLIHTRATRHFGSYKLLMASFSIFSILYALVEVLTQPIMHISGTGLMLYVGTTFLPI 83

Query: 360 SDGSGNRAAPFKCNRF 313
           S   G+  A F C+ F
Sbjct: 84  SKEFGHFIAAFYCSTF 99


>AC006769-6|AAF60582.1|  274|Caenorhabditis elegans Hypothetical
           protein Y45G12C.6 protein.
          Length = 274

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = -2

Query: 537 TSIVLICSPTVKGFRSHLCLKRMIFTFISLRSWVYELHH-VMHLFGKSDVMYGDTKFLIL 361
           T + LI +   + F S+  L      F  L + V  L   +MH+ G   ++Y  T FL +
Sbjct: 24  TLLFLIHTRATRHFGSYKLLMASFSIFSILYALVEVLTQPIMHISGTGLMLYVGTTFLPI 83

Query: 360 SDGSGNRAAPFKCNRF 313
           S   G+  A F C+ F
Sbjct: 84  SKEFGHFIAAFYCSTF 99


>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
           protein Y26D4A.9 protein.
          Length = 1435

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = -3

Query: 281 NIDSQIGIRKCYKPTVEKLIQNVLKL--TLNS*GYECIKINEAFFENVKYYLEKIVSHVQ 108
           NI+  I     ++ T+EK  +N +++   +       +K+ +A   + KYYLEK+   V+
Sbjct: 572 NIEKFISFNYKFEKTLEKTNKNKIEMKSAIKKVKEAIVKVEKAIGLSYKYYLEKVKEAVE 631


>AL110471-3|CAB63308.1|  818|Caenorhabditis elegans Hypothetical
           protein W06D4.6 protein.
          Length = 818

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 311 QKRLHLNGAARFPEPSLRIRNLVSPYITSLFPNK 412
           QKR  L  + R  EP    +  +SP+ TS+ P+K
Sbjct: 45  QKRKSLGYSGRTEEPKNIHKTFISPFSTSVSPSK 78


>AL034364-6|CAA22254.2|  818|Caenorhabditis elegans Hypothetical
           protein W06D4.6 protein.
          Length = 818

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 311 QKRLHLNGAARFPEPSLRIRNLVSPYITSLFPNK 412
           QKR  L  + R  EP    +  +SP+ TS+ P+K
Sbjct: 45  QKRKSLGYSGRTEEPKNIHKTFISPFSTSVSPSK 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,307,091
Number of Sequences: 27780
Number of extensions: 254678
Number of successful extensions: 457
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)