Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00464X
         (583 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59280.1 68416.m06608 signaling molecule-related contains sim...    29   3.0  
At1g17690.1 68414.m02190 expressed protein                             28   4.0  
At5g65780.1 68418.m08277 branched-chain amino acid aminotransfer...    28   5.2  
At5g59810.1 68418.m07499 subtilase family protein subtilisin-lik...    27   6.9  
At3g46400.1 68416.m05030 leucine-rich repeat protein kinase, put...    27   9.1  

>At3g59280.1 68416.m06608 signaling molecule-related contains
           similarity to mitochondria-associated granulocyte
           macrophage CSF signaling molecule, mitochondrial
           precursor (CGI-136) [Mus musculus] SWISS-PROT:Q9CQV1
          Length = 116

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
 Frame = -3

Query: 269 QIGIRKCYKPTVEKLIQNVLKLTLNS*GYECIKINEAFFEN----VKYYLEKIVSHVQFC 102
           Q G+R+  K   E+  + +L +T  +   E ++  +  FEN      +YL+  V   + C
Sbjct: 43  QNGVRQAGKAITEQEARQILGVTEKTSWEEILQKYDKLFENNAKAGSFYLQSKVHRAKEC 102

Query: 101 LQVFYQ 84
           L+V Y+
Sbjct: 103 LEVVYR 108


>At1g17690.1 68414.m02190 expressed protein
          Length = 754

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 320 LHLNGAARFPEPSLRIRNLVSPYITSLFPNKCI 418
           L+L+G ARF   S+ + + ++P + SLF   C+
Sbjct: 526 LYLDGHARFYRQSIILSSYLTPEMNSLFGRHCL 558


>At5g65780.1 68418.m08277 branched-chain amino acid aminotransferase
           5 / branched-chain amino acid transaminase 5 (BCAT5)
           nearly identical to SP|Q9FYA6 Branched-chain amino acid
           aminotransferase 5, chloroplast precursor (EC 2.6.1.42)
           (Atbcat-5) {Arabidopsis thaliana}; contains Pfam
           profile: PF01063 aminotransferase class IV
          Length = 415

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 266 FENQYSRMLKRVMIYQKRLH-LNGAARFPEPSLRIRNLVSPYITSLF 403
           F   Y     R      RLH L+    FP  SLRIR+  SP I+S F
Sbjct: 10  FHRNYILCASRAATSTTRLHSLSSLRNFPSSSLRIRHCPSP-ISSNF 55


>At5g59810.1 68418.m07499 subtilase family protein subtilisin-like
           protease AIR3, Arabidopsis thaliana, EMBL:AF098632
          Length = 778

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +2

Query: 245 YNTF*CLFENQYSRMLKRVMIYQKRLHLNGAARFPEPSLRIRNLVSPYITSLFPNK 412
           + TF   F   +    K  + Y  + H+NG A   + +        P + S+FPNK
Sbjct: 67  HRTFLASFVGSHENA-KEAIFYSYKRHINGFAAILDENEAAEIAKHPDVVSVFPNK 121


>At3g46400.1 68416.m05030 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 883

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 263 GIRKCYKPTVEKLIQNVLKLTLNS*GYECIKINEAF 156
           GIR CY   V K    +++ T+N   Y+ + I+  F
Sbjct: 88  GIRNCYNVNVYKGTNYLIRATINYGNYDGLNISPRF 123


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,241,206
Number of Sequences: 28952
Number of extensions: 223507
Number of successful extensions: 510
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)