Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00463
(536 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Simi... 115 2e-26
At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Simi... 115 2e-26
At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60... 113 7e-26
At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) simi... 113 7e-26
At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138... 37 0.010
At5g25320.1 68418.m03004 ACT domain-containing protein contains ... 29 2.0
At5g05900.1 68418.m00651 UDP-glucoronosyl/UDP-glucosyl transfera... 29 2.0
At4g24350.1 68417.m03494 phosphorylase family protein contains P... 29 2.0
At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase fa... 28 3.4
At2g13150.1 68415.m01450 expressed protein contains a bZIP trans... 28 3.4
At1g76990.3 68414.m08966 ACT domain containing protein low simil... 28 4.5
At1g76990.2 68414.m08965 ACT domain containing protein low simil... 28 4.5
At1g76990.1 68414.m08964 ACT domain containing protein low simil... 28 4.5
At1g20020.1 68414.m02507 ferredoxin--NADP(+) reductase, putative... 28 4.5
At5g41220.1 68418.m05009 glutathione S-transferase, putative sim... 27 6.0
At4g31490.1 68417.m04473 coatomer beta subunit, putative / beta-... 27 6.0
At3g45880.1 68416.m04965 hypothetical protein 27 6.0
At1g54926.1 68414.m06272 hypothetical protein 27 6.0
At1g04680.1 68414.m00465 pectate lyase family protein similar to... 27 6.0
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim... 27 7.9
At5g05890.1 68418.m00649 UDP-glucoronosyl/UDP-glucosyl transfera... 27 7.9
>At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Similar
to ribosomal protein L21 (gb|L38826). ESTs
gb|AA395597,gb|ATTS5197 come from this gene
Length = 164
Score = 115 bits (276), Expect = 2e-26
Identities = 55/111 (49%), Positives = 73/111 (65%), Gaps = 1/111 (0%)
Frame = +1
Query: 19 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 198
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 199 TGRVYNVTAHALGVIVNKRFAEGLYRS-ASISVLSMSSTPSADKTSLRESK 348
TGR++NVT A+GV VNK+ + R + V + + A++ LR+ K
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKK 111
Score = 74.9 bits (176), Expect = 3e-14
Identities = 36/84 (42%), Positives = 53/84 (63%)
Frame = +3
Query: 240 DCQQAVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAP 419
+ + + RII KRI++RVEHV+ S+C ++F R K+N+ L AKA G+T++ KRQP
Sbjct: 75 EVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKG 134
Query: 420 PKAAHIVSGTEKPVLLAPIPYEFV 491
PK +V G + PIPY+ V
Sbjct: 135 PKPGFMVEGMTLET-VTPIPYDVV 157
>At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Similar
to L21 family of ribosomal protein; amino acid sequence
is identical to F21M12.8
Length = 164
Score = 115 bits (276), Expect = 2e-26
Identities = 55/111 (49%), Positives = 73/111 (65%), Gaps = 1/111 (0%)
Frame = +1
Query: 19 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 198
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 199 TGRVYNVTAHALGVIVNKRFAEGLYRS-ASISVLSMSSTPSADKTSLRESK 348
TGR++NVT A+GV VNK+ + R + V + + A++ LR+ K
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKK 111
Score = 74.9 bits (176), Expect = 3e-14
Identities = 36/84 (42%), Positives = 53/84 (63%)
Frame = +3
Query: 240 DCQQAVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAP 419
+ + + RII KRI++RVEHV+ S+C ++F R K+N+ L AKA G+T++ KRQP
Sbjct: 75 EVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKG 134
Query: 420 PKAAHIVSGTEKPVLLAPIPYEFV 491
PK +V G + PIPY+ V
Sbjct: 135 PKPGFMVEGMTLET-VTPIPYDVV 157
>At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60S
ribosomal protein L21 GI:3885884 from [Oryza sativa]
Length = 164
Score = 113 bits (272), Expect = 7e-26
Identities = 54/111 (48%), Positives = 73/111 (65%), Gaps = 1/111 (0%)
Frame = +1
Query: 19 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 198
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 199 TGRVYNVTAHALGVIVNKRFAEGLYRS-ASISVLSMSSTPSADKTSLRESK 348
TGR++NVT A+GV VNK+ + R + V + + A++ LR+ +
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQ 111
Score = 75.8 bits (178), Expect = 2e-14
Identities = 36/84 (42%), Positives = 54/84 (64%)
Frame = +3
Query: 240 DCQQAVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAP 419
+ + + RII KRI++RVEHV+ S+C ++F R K+N+ L +AKA G+T++ KRQP
Sbjct: 75 EVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPKG 134
Query: 420 PKAAHIVSGTEKPVLLAPIPYEFV 491
PK +V G + PIPY+ V
Sbjct: 135 PKPGFMVEGMTLET-VTPIPYDVV 157
>At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) similar
to 60S ribosomal protein L21 GB:Q43291 GI:2851508 from
[Arabidopsis thaliana]
Length = 164
Score = 113 bits (272), Expect = 7e-26
Identities = 54/111 (48%), Positives = 73/111 (65%), Gaps = 1/111 (0%)
Frame = +1
Query: 19 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 198
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 199 TGRVYNVTAHALGVIVNKRFAEGLYRS-ASISVLSMSSTPSADKTSLRESK 348
TGR++NVT A+GV VNK+ + R + V + + A++ LR+ +
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQ 111
Score = 75.8 bits (178), Expect = 2e-14
Identities = 36/84 (42%), Positives = 54/84 (64%)
Frame = +3
Query: 240 DCQQAVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAP 419
+ + + RII KRI++RVEHV+ S+C ++F R K+N+ L +AKA G+T++ KRQP
Sbjct: 75 EVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPKG 134
Query: 420 PKAAHIVSGTEKPVLLAPIPYEFV 491
PK +V G + PIPY+ V
Sbjct: 135 PKPGFMVEGMTLET-VTPIPYDVV 157
>At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown;
Length = 672
Score = 36.7 bits (81), Expect = 0.010
Identities = 23/65 (35%), Positives = 30/65 (46%)
Frame = +1
Query: 169 GMPHKVYHGKTGRVYNVTAHALGVIVNKRFAEGLYRSASISVLSMSSTPSADKTSLRESK 348
G P K Y+G GR+ AHAL NK + L+R L+ P AD+ S + S
Sbjct: 182 GKPKKTYNGTYGRLLAYAAHALAEGQNKLEPKELWREPKDQALAWK--PCADQRSWKPSD 239
Query: 349 RMRGY 363
GY
Sbjct: 240 GKNGY 244
>At5g25320.1 68418.m03004 ACT domain-containing protein contains
Pfam ACT domain PF01842
Length = 500
Score = 29.1 bits (62), Expect = 2.0
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 156 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQAV 257
C +GY+ ++ KDR R+ D C+ D Q +
Sbjct: 291 CEERGYSIVTVKSKDRRRLMFDTICTLVDMQYVI 324
>At5g05900.1 68418.m00651 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 450
Score = 29.1 bits (62), Expect = 2.0
Identities = 19/54 (35%), Positives = 23/54 (42%)
Frame = -3
Query: 252 LVDNHTESMSSHVVHATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERN 91
L N S V + + FVW LLN SDV+ V +H R ERN
Sbjct: 346 LTHNGWNSTVESVFEGVPMICMPFVWDQLLNARFVSDVWMVG--LHLEGRIERN 397
>At4g24350.1 68417.m03494 phosphorylase family protein contains Pfam
PF01048: Phosphorylase family
Length = 336
Score = 29.1 bits (62), Expect = 2.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 144 DVYNVSNFVHFHVRGERNSSM 82
DV+NV VHF + G N+SM
Sbjct: 114 DVFNVKGIVHFGIAGNMNNSM 134
>At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase family
protein belongs to Pfam:PF03372:
Endonuclease/Exonuclease/phosphatase family; contains 3
WD-40 repeats (PF00400);similar to Type II
inositol-1,4,5-trisphosphate 5-phosphatase EC 3.1.3.56
(5PTASE) (INPP5B) (SP:P32019) [Homo sapiens]
Length = 1305
Score = 28.3 bits (60), Expect = 3.4
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +3
Query: 279 RINIRVEHVKHSKCRQDFLKRVKENERL 362
+ ++++EHV S RQ+F + +K NE++
Sbjct: 920 KFHVKIEHVDRSVRRQEFGRIIKTNEKV 947
>At2g13150.1 68415.m01450 expressed protein contains a bZIP
transcription factor basic domain signature (PDOC00036)
Length = 262
Score = 28.3 bits (60), Expect = 3.4
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +1
Query: 298 SMSSTPSADKTSLRESKRMRGY*RKPRLPARPST*RDSQLPLKLPTSSVELRNPS 462
S +STPS ++ + S P L PS+ R + +PL P++SVE R+ S
Sbjct: 4 SDNSTPSRPRSITQPSLAFSSL---PPLSPSPSSSRRNSIPLMNPSASVESRDSS 55
>At1g76990.3 68414.m08966 ACT domain containing protein low
similarity to uridylyltransferase SP|P56884 from
Rhizobium meliloti; contains Pfam ACT domain PF01842
Length = 453
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 156 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQAV 257
C KGY+ ++ +DR ++ D C+ D Q V
Sbjct: 259 CEEKGYSVINVSCEDRPKLMFDIVCTLTDMQYIV 292
>At1g76990.2 68414.m08965 ACT domain containing protein low
similarity to uridylyltransferase SP|P56884 from
Rhizobium meliloti; contains Pfam ACT domain PF01842
Length = 453
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 156 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQAV 257
C KGY+ ++ +DR ++ D C+ D Q V
Sbjct: 259 CEEKGYSVINVSCEDRPKLMFDIVCTLTDMQYIV 292
>At1g76990.1 68414.m08964 ACT domain containing protein low
similarity to uridylyltransferase SP|P56884 from
Rhizobium meliloti; contains Pfam ACT domain PF01842
Length = 453
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 156 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQAV 257
C KGY+ ++ +DR ++ D C+ D Q V
Sbjct: 259 CEEKGYSVINVSCEDRPKLMFDIVCTLTDMQYIV 292
>At1g20020.1 68414.m02507 ferredoxin--NADP(+) reductase, putative /
adrenodoxin reductase, putative strong similarity to
Ferredoxin--NADP reductase, chloroplast precursor (EC
1.18.1.2) (FNR) from {Pisum sativum} SP|P10933,
{Mesembryanthemum crystallinum} SP|P41343, {Spinacia
oleracea} SP|P00455, [Capsicum annuum] GI:6899972
Length = 369
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 118 YKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVN 249
Y+ G V + +G + G PHKV R+Y++ + ALG + N
Sbjct: 125 YREGQSVGVIADGIDKNGKPHKV------RLYSIASSALGDLGN 162
>At5g41220.1 68418.m05009 glutathione S-transferase, putative
similar to emb|CAA10662
Length = 590
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 78 HTWNYSALHVHESVQSWRHCRHQRQWCS 161
+T NY + E +WR RH ++WCS
Sbjct: 370 YTNNYKSNFTLE--HAWRELRHSKKWCS 395
>At4g31490.1 68417.m04473 coatomer beta subunit, putative /
beta-coat protein, putative / beta-COP, putative similar
to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
from {Rattus norvegicus} SP|P23514, {Mus musculus}
SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 948
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 285 NIRVEHVKHSKCRQDFLKRVKENE-RLLKEAKAAGKTVN 398
N+ ++ + CRQ F+K + E + R ++E KA +T +
Sbjct: 628 NVEMKKIWLESCRQSFVKMISEKQLREMEELKAKTQTTH 666
>At3g45880.1 68416.m04965 hypothetical protein
Length = 431
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = -1
Query: 413 WLSLQVDGLAGSLGFLQ*PLILFDSLKEVLSALGVLDMLNTDIDALRYNPSANRL 249
W +Q D FLQ L SL VLS D ++D + ++ PSA L
Sbjct: 299 WYDMQFDIKYAYFNFLQSLLYKSSSLNPVLSWREDEDSESSDAEGSKFTPSATNL 353
>At1g54926.1 68414.m06272 hypothetical protein
Length = 273
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 237 CDCQQAVRGRIIPKRINIRVEHVKHSK 317
CD + + R+ PK +I +H KH K
Sbjct: 59 CDLSEGCKNRMTPKAFHIISQHPKHHK 85
>At1g04680.1 68414.m00465 pectate lyase family protein similar to
pectate lyase GP:14531296 from [Fragaria x ananassa]
Length = 431
Score = 27.5 bits (58), Expect = 6.0
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -3
Query: 195 SMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERNS-SMCAEPASEQVPGAAAVTLGVRH 19
S +F W T+ +D +S F HV + NS S CA+ + V G+ A+T+ H
Sbjct: 216 SETHFGWRTM------ADGDAISIFGSSHVWIDHNSLSHCADGLVDAVMGSTAITISNNH 269
Query: 18 L 16
L
Sbjct: 270 L 270
>At5g41240.1 68418.m05011 glutathione S-transferase, putative
similar to glutathione S-transferase, GST 10b
GB:CAA10662 [Arabidopsis thaliana] 37349.
Length = 591
Score = 27.1 bits (57), Expect = 7.9
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +3
Query: 123 SWRHCRHQRQWCSS 164
+WR RH ++WCS+
Sbjct: 385 AWRELRHNKKWCST 398
>At5g05890.1 68418.m00649 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 455
Score = 27.1 bits (57), Expect = 7.9
Identities = 22/80 (27%), Positives = 31/80 (38%)
Frame = -3
Query: 252 LVDNHTESMSSHVVHATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERNSSMCAE 73
L N S V A + + F W +LN SDV+ V ++ R ERN A
Sbjct: 351 LTHNGWSSTVESVCEAVPMICLPFRWDQMLNARFVSDVWMVG--INLEDRVERNEIEGAI 408
Query: 72 PASEQVPGAAAVTLGVRHLR 13
P A+ + HL+
Sbjct: 409 RRLLVEPEGEAIRERIEHLK 428
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,572,738
Number of Sequences: 28952
Number of extensions: 239969
Number of successful extensions: 787
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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