Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00462
(616 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 131 7e-32
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 128 8e-31
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 31 0.10
SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.71
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 27 2.2
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc... 26 5.0
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 26 5.0
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S... 26 5.0
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2... 25 8.7
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 8.7
SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 8.7
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 25 8.7
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 131 bits (317), Expect = 7e-32
Identities = 64/84 (76%), Positives = 69/84 (82%)
Frame = +1
Query: 253 PADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 432
PADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+IV DP D
Sbjct: 74 PADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRAD 133
Query: 433 HQPITEASYVNIPVIALCNTDSPL 504
Q I EAS+VNIPVIALC+TDS L
Sbjct: 134 AQAIKEASFVNIPVIALCDTDSIL 157
Score = 87.4 bits (207), Expect = 1e-18
Identities = 36/65 (55%), Positives = 51/65 (78%)
Frame = +2
Query: 62 VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 241
VL ++D+ +LAA +H+G++N+ +ME YV+KRR+DG H+INL +TWEKLVLAAR +
Sbjct: 10 VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69
Query: 242 AIENP 256
IENP
Sbjct: 70 TIENP 74
Score = 46.4 bits (105), Expect = 3e-06
Identities = 23/35 (65%), Positives = 26/35 (74%)
Frame = +3
Query: 510 VDIAIPCNTKSSHSIGLMLWLLAREVLRLRGVLPR 614
VD+AIP N K SIGL +LLAREVLRLRG + R
Sbjct: 160 VDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISR 194
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 128 bits (308), Expect = 8e-31
Identities = 63/99 (63%), Positives = 75/99 (75%)
Frame = +1
Query: 253 PADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 432
PADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL++V DP D
Sbjct: 73 PADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRAD 132
Query: 433 HQPITEASYVNIPVIALCNTDSPLRLWTLLSHATPSLPT 549
Q I EAS+VNIPVIALC+TDS +L+H ++PT
Sbjct: 133 AQAIKEASFVNIPVIALCDTDS------ILNHVDIAIPT 165
Score = 87.4 bits (207), Expect = 1e-18
Identities = 35/69 (50%), Positives = 53/69 (76%)
Frame = +2
Query: 50 GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 229
G ++L +ED+ ++LAA H+G++N+ +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5 GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64
Query: 230 RAVVAIENP 256
R + IENP
Sbjct: 65 RVIATIENP 73
Score = 48.8 bits (111), Expect = 6e-07
Identities = 24/35 (68%), Positives = 27/35 (77%)
Frame = +3
Query: 510 VDIAIPCNTKSSHSIGLMLWLLAREVLRLRGVLPR 614
VDIAIP N K SIGL+ +LLAREVLR+RG L R
Sbjct: 159 VDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSR 193
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 31.5 bits (68), Expect = 0.10
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +1
Query: 397 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRLWT 516
P L+++L+P ++ EA ++P I + +TD+ R+ T
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVT 219
>SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 28.7 bits (61), Expect = 0.71
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 483 VQHRLPTKIVDIAIPCNTKSSHSIGLMLWLL 575
+ H LP +PC+ K H++GL+LW L
Sbjct: 193 LSHTLPVGSKYFFVPCD-KKHHTLGLLLWKL 222
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +1
Query: 418 DPAQDHQPITEASYV--NIPVIALCNTDSPLRLWTLLS 525
D DH PI + ++ A C DS +R+W L++
Sbjct: 13 DANDDHTPIYSVDFQKNSLNKFATCGGDSKIRIWQLIT 50
>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1088
Score = 25.8 bits (54), Expect = 5.0
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = -1
Query: 268 RTHQRVLDGYDSTSSQ--NKFFPGTTQVDHMGTISTSFVDIGLHLEVN 131
RT + DSTS NK+ G V + S S DIGLH E +
Sbjct: 345 RTSAEMFTTVDSTSRAIVNKYSLGNN-VSTVNPFSKSLYDIGLHAETD 391
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 5.0
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = -2
Query: 447 SNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRRSTGVRGKLQYSTLTEGP 280
S GL L R + E F + +S + W T + + G+RG ++ EGP
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP 222
>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
Mde5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -1
Query: 265 THQRVLDGYDSTSSQNKFFPGTTQVDHMGTISTSFVDIGLHLEVN 131
T Q ++D D+ + + T V+HMG+ +D G++ N
Sbjct: 118 TEQDLIDLADALHDRGMYLMVDTVVNHMGSSDPRNIDYGIYRPFN 162
>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
Byr2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 659
Score = 25.0 bits (52), Expect = 8.7
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = -1
Query: 193 VDHMGTISTSFVDIGLHLEVNIFCPKMGGCSKHF-GDIFLVEGEHV*SSRH 44
VD+ G I S I LE+N K GG F G F + E V + H
Sbjct: 530 VDNKGKIKISDFGISKKLELNSTSTKTGGARPSFQGSSFWMAPEVVKQTMH 580
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 153 MSTNDVLMVPM*STCVVPGKNLFWLLVL 236
M+ N V + + T PG N FW L++
Sbjct: 920 MTLNPVFQIGLNGTTHSPGNNSFWPLII 947
>SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 227
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 521 SNVHNLSGESVLHKAITGMLTYEA 450
SNVHN G+ +H+A + L +++
Sbjct: 102 SNVHNFKGKDSIHEAWSQYLIFDS 125
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 25.0 bits (52), Expect = 8.7
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +1
Query: 409 IVLDPAQDHQPITEASYVNIPVIALCNTDSPLRLWTLLSH 528
I +P Q H P + + VN V L NT S W+ L H
Sbjct: 359 ICYEPPQ-HVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDH 397
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,803,440
Number of Sequences: 5004
Number of extensions: 61698
Number of successful extensions: 166
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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