Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00461
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    29   0.89 
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    28   1.6  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    26   4.7  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.3  

>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 126 VAQSSPAPRYRPRIWLNAPSKFWM 55
           ++QSSP+P   P  W N  +  W+
Sbjct: 126 ISQSSPSPSLNPESWTNFANMLWL 149


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -1

Query: 570 YLLSSKLKIISNTLPTF*INHLEIRSRTLKNIFMFFFMLVYLA 442
           + L+ +L+I +  +P    +HLE+RS  L  IF  FF L  L+
Sbjct: 643 FSLTKRLEI-TMPIPASDYSHLELRSLLLARIFQCFFELSQLS 684


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 54   TSKTY-LEHLAIFLAGNEEREKIAPRSAYEQRDDVSSING 170
            T +T+ +E++A +LA   ER  +AP       DD+  + G
Sbjct: 963  TIRTFVIENIAKYLASVRERRDLAPMLEEPDMDDLDDMEG 1002


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 20/74 (27%), Positives = 31/74 (41%)
 Frame = +1

Query: 427  FRSLDCKINQHKKKHENIFQCSTSNF*MVNLECRQCIRNNLKF*RKQISKFV*LM*NFIL 606
            F +L     ++ + H    Q  T N  +  L  R     N+++  K +S    L      
Sbjct: 797  FTTLKKTEKKYAEMHAKFIQIHTKNSDVPTLWDRFLALGNVRYQLKDLSDLEKLH-QVTC 855

Query: 607  SVI*VRVHHKFSPF 648
            S I +R+ HKF PF
Sbjct: 856  SYISIRIPHKFIPF 869


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,820,938
Number of Sequences: 5004
Number of extensions: 56861
Number of successful extensions: 107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)