Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00461
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1116 + 8839946-8840048,8840142-8842064,8842192-8842307,884...    29   3.7  
08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135     29   4.9  

>01_01_1116 +
           8839946-8840048,8840142-8842064,8842192-8842307,
           8843340-8843763,8845187-8845452
          Length = 943

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +1

Query: 310 FKLEHSSNLLRTR--YLYLHYSLKYVIVKIYSR*PLLVSL*FRSLDCKINQHKKKHENIF 483
           + +E   N +R +  Y YLH+ L  V ++  +R  L VS+     DC+  + K     + 
Sbjct: 32  YHVEREINSIRAKHQYHYLHFGLIQVAIRSLTRKGLNVSVLACLRDCRNKRFKDSLLGMM 91

Query: 484 QCSTSN 501
           + S SN
Sbjct: 92  EASLSN 97


>08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135
          Length = 1275

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +1

Query: 310 FKLEHSSNLLRTR--YLYLHYSLKYVIVKIYSR*PLLVSL*FRSLDCKINQHKKKHENIF 483
           + +E   N +R +  Y YLH+ L  V ++  +R  L VS+     DC+  + K     + 
Sbjct: 32  YHVEREINSIRAKHQYHYLHFGLIQVAIRSLTRKGLNVSVLACLRDCRNKRFKDSLLGMV 91

Query: 484 QCSTSN 501
           + S SN
Sbjct: 92  EASLSN 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,805,621
Number of Sequences: 37544
Number of extensions: 317626
Number of successful extensions: 688
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)