Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00461
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.2  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   2.9  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   5.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.1  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = +2

Query: 392 YIPDNPC*CHCSSD--PSIAR*TNIKKNMKI--FFNVLLRIS 505
           YI  NP  C+CS D  P I   T+ ++  +I    NV+ R S
Sbjct: 676 YIGGNPFNCNCSMDWLPGINNQTSTREYPRIMDLDNVMCRTS 717


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 448 INQHKKKHENIFQCSTSN 501
           +N H K H N++Q   +N
Sbjct: 32  LNSHLKSHSNVYQYRCAN 49


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 381 NCKNIFPITLVSVTVV 428
           N KNIFP+  V + V+
Sbjct: 3   NMKNIFPVLFVIINVL 18


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +1

Query: 13  GEANLRSCCSSCRPHPKLTWSI 78
           G +    C +S  P P++TW +
Sbjct: 408 GPSMFLKCVASGNPTPEITWEL 429


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +1

Query: 13  GEANLRSCCSSCRPHPKLTWSI*PYSWP 96
           G A    C ++  P P++TW++  ++ P
Sbjct: 436 GPAVSLKCSAAGNPTPQVTWALDGFALP 463


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +1

Query: 13  GEANLRSCCSSCRPHPKLTWSI*PYSWP 96
           G A    C ++  P P++TW++  ++ P
Sbjct: 436 GPAVSLKCSAAGNPTPQVTWALDGFALP 463


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,020
Number of Sequences: 438
Number of extensions: 3838
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)