Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00460
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch...    30   0.40 
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    29   0.91 
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    27   2.1  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    26   4.9  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    26   4.9  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    26   6.4  
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha...    26   6.4  
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat...    25   8.5  
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    25   8.5  

>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 388

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +1

Query: 352 NYCYSVALMHRRDTRKVRVKNFAEVFPSKFL-DSQVFTQARETAAVIPPDVPRNLLSFHE 528
           +YCY   ++  +D RK+  +N    FP+    D+Q  T AR   +    D  RN+ S  E
Sbjct: 85  DYCYYKKILKNKDFRKLLNENLHVDFPADLTEDAQRNTVARILNSKQLSDAIRNINSILE 144

Query: 529 TTLR 540
             LR
Sbjct: 145 KYLR 148


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +2

Query: 317 PLHE*T*TLSCSTIVTLWH*CTDVIPEKSELRILQKYFPLNSWIPKYSLR 466
           PLHE     S +   + W        + S +R +  Y P+  W+P YSLR
Sbjct: 26  PLHEIPSYQSLARRSSTWKRANIPQQKPSLVRRINYYIPVLHWLPNYSLR 75


>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 228 YLNIKKWQMTSWRSHGCTRERITR 299
           ++++ K+Q   WR  GC  ER+ R
Sbjct: 54  FVDVGKFQSWKWRHWGCVTERVLR 77


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 981

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 26   ITPKGENNSVFQLTEQFLTEDYANNGIE 109
            +TP     +++ L+E FLT++   NG+E
Sbjct: 949  MTPSNGLRNIYPLSETFLTKEAIANGLE 976


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 35   KGENNSVFQLTEQFLTEDYANNGIELNNRFGDDASEKIPLKNLSK 169
            KG++ S    T    TE Y N   E+ ++ G+   E  PL+  SK
Sbjct: 1131 KGKSLSFVSSTSTVDTEYYVNLSNEITSKGGNGIPESDPLQGSSK 1175


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 162 SANSQNLKLQLNYPRTLNSHCFYLNIKK 245
           +++S+NL + +N  R L   C Y NI+K
Sbjct: 629 ASSSRNLLITMNCLRVLEKVCKYSNIRK 656


>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 541

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +2

Query: 101 GIELNNRFGDDASEKIPLKNLSKLPEFKIATQLPKDAEFSLFLPKHQEMANDF 259
           G+  +++F    S  IP K L   PEFKIAT    +  F   + K+  +A  F
Sbjct: 136 GMRPHDKFYFVHSYMIPEKGLILPPEFKIATTKYGNETFVGAIVKNNFLATQF 188


>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
           phosphatidyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +1

Query: 550 KKNTALRTGEKISASTCIIITGIWSTRLRPTIFQS*LRTVVG 675
           K NT    G+  S S  II    WST L+  IF+    T++G
Sbjct: 410 KGNTYHAKGKHYSLSFSIINI-FWSTALKSYIFEKFTNTILG 450


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 176 EFKIATQLPKDAEFSLFLPKHQE 244
           E   A+    D EFSLF+P+H++
Sbjct: 296 ELSDASSSDLDEEFSLFIPRHKK 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,135,507
Number of Sequences: 5004
Number of extensions: 67977
Number of successful extensions: 181
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)