Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00460
         (739 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1023 + 8840754-8842988,8843189-8843362                           34   0.14 
01_06_1276 - 35918954-35919106,35919220-35919325,35919477-359195...    33   0.31 
01_07_0205 - 41978437-41980599,41980805-41981215                       29   3.9  
07_01_0914 - 7693305-7693513,7693613-7694111,7694716-7696316,769...    29   5.1  
03_03_0246 + 15789635-15794227,15794314-15794555,15794630-157947...    28   8.9  

>07_01_1023 + 8840754-8842988,8843189-8843362
          Length = 802

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +2

Query: 11  PNEPLITPKGENNSVFQLTEQFLTEDYANNGIELNNRFGDDASEKIPLKNLS 166
           P++ ++  K +NN    L    +  + ANN   L+ RF +DA+  IP +NLS
Sbjct: 481 PSKVVLPKKSKNNQRRNLVTTAVKCEEANND-PLSRRFSEDANRNIPTRNLS 531


>01_06_1276 -
           35918954-35919106,35919220-35919325,35919477-35919574,
           35919693-35919757,35919877-35920033,35920177-35920268,
           35920379-35920493,35920574-35920622,35920705-35920858,
           35920993-35921019,35921530-35921707,35922326-35922685,
           35922979-35922987,35923170-35923238
          Length = 543

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +2

Query: 167 KLPEFKIATQLPKDAEFSLFLPKHQEM-ANDFLAFSWMYQRTNYKICYRH 313
           ++P++K+  + PKD  F   LPK   +   DF + ++ +Q  NY +  RH
Sbjct: 346 RVPDYKVTIRPPKDGSFFKNLPKSSAIKLIDFGSTTFEHQDHNYVVSTRH 395


>01_07_0205 - 41978437-41980599,41980805-41981215
          Length = 857

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -1

Query: 85  LSQKLFCELKHRIV-FALGCDERLIWTIE 2
           L  +L+CEL   +V +A  C+ER +W IE
Sbjct: 311 LRSRLYCELDDWLVSWADACEERSVWRIE 339


>07_01_0914 -
           7693305-7693513,7693613-7694111,7694716-7696316,
           7696509-7696530
          Length = 776

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +3

Query: 438 ILG-FPSIHSGS*NCSRYSTRCSTQPIIIP-RDYTATDLEEEHRLAYWREDIGINLH 602
           I+G F S   G    + +S      P II  RDY + D++  H L +   D G  LH
Sbjct: 444 IMGWFASFWRGVPTSATFSCPVMNPPFIIDFRDYESMDIKSAHSLFWDFNDAGTTLH 500


>03_03_0246 + 15789635-15794227,15794314-15794555,15794630-15794771,
            15796089-15796272,15796349-15796696,15796753-15797450,
            15798208-15798900
          Length = 2299

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +2

Query: 20   PLITPKGENNSVFQLTEQFLTEDYANNGIELNNRFGDDASEKIPLKNLSKLPEFKIATQL 199
            PL  P  ++        QF+     +N    NNRF + ++  +P  N   +P    ATQ 
Sbjct: 2092 PLSVPLQQHPMDGTAAAQFVHNIQVDNKASSNNRFQEPSASVVPADNSKNIPNAS-ATQF 2150

Query: 200  PKD 208
              D
Sbjct: 2151 TDD 2153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,191,671
Number of Sequences: 37544
Number of extensions: 435735
Number of successful extensions: 1122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)