Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00460
         (739 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26401| Best HMM Match : DUF1613 (HMM E-Value=2)                     32   0.42 
SB_980| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   1.3  
SB_22592| Best HMM Match : CXC (HMM E-Value=3.7)                       31   1.3  
SB_59446| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_44080| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_20452| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_17059| Best HMM Match : 7tm_1 (HMM E-Value=2.9e-34)                 29   3.0  
SB_57310| Best HMM Match : rve (HMM E-Value=2.5e-25)                   29   5.2  
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)                   29   5.2  
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)                    28   6.9  
SB_40539| Best HMM Match : DUF1613 (HMM E-Value=2.1)                   28   9.1  
SB_32110| Best HMM Match : PEGSRP (HMM E-Value=9.6)                    28   9.1  
SB_18164| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)                 28   9.1  
SB_13514| Best HMM Match : DUF1613 (HMM E-Value=9.5)                   28   9.1  
SB_58810| Best HMM Match : DUF1613 (HMM E-Value=1.8)                   28   9.1  
SB_57933| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_54334| Best HMM Match : DUF1613 (HMM E-Value=9.5)                   28   9.1  
SB_49623| Best HMM Match : DUF1613 (HMM E-Value=2.1)                   28   9.1  
SB_26336| Best HMM Match : Dickkopf_N (HMM E-Value=4.2)                28   9.1  
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_14163| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_26401| Best HMM Match : DUF1613 (HMM E-Value=2)
          Length = 345

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 219 HCFYLNIKKWQMTSWRSHGCTRERITRFAIDMRLCTSKPEPSVVQL 356
           HC +L I K  +T W+  G   ++  R  + MR+    P P +V++
Sbjct: 81  HCLFLGIAKHCLTLWKQEGLLSDKDFRL-LQMRVDAVVPPPEIVRI 125


>SB_980| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 401 SELRILQKYFPLNSWIPKYSLR 466
           S L  L+K FP+  W+PKY+ R
Sbjct: 64  SPLETLEKLFPIVQWLPKYNFR 85


>SB_22592| Best HMM Match : CXC (HMM E-Value=3.7)
          Length = 499

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +3

Query: 219 HCFYLNIKKWQMTSWRSHGCTRERITRFAIDMRLCTSKPEPSVVQL 356
           HC +L I K  +T W+  G   ++  R  + +R+    P P +V++
Sbjct: 119 HCLFLGIAKHCLTLWKQEGLLSDKDFRL-LQIRVDAVVPPPEIVRI 163



 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +3

Query: 219 HCFYLNIKKWQMTSWRSHGCTRERITRFAIDMRLCTSKPEPSVVQL 356
           HC +L I K  +T W+  G   ++  R  + +R+    P P +V++
Sbjct: 436 HCLFLGIAKHCLTLWKQEGLLSDKDFRL-LQIRVDAVVPPPEIVRI 480


>SB_59446| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 756

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
 Frame = +3

Query: 594 NLHHYHWHLVYPFTAND-----LSIVAKDRRGELFFYMHQQVIARFNCERLCN 737
           N HHY  H  Y           L I     R  L    H QV+ +FNCE L N
Sbjct: 402 NYHHYQHHYTYHCPGQQQPLKQLFITPLSPRHPLTPPTHVQVLKKFNCEELRN 454


>SB_44080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +1

Query: 307 STCAFARVNLNPQLFNYCYSVALMHRRDTRKVRVKNFAEVFPS-KFLDSQVFTQARETAA 483
           S C   + + NP+L NY Y+  L     T  + +   + + PS   + + + TQ  + A 
Sbjct: 36  SKCVVLKSSENPKLLNYFYAADLPEEFATANISITPPSSLSPSTNIIITTIVTQQHDFAT 95

Query: 484 VI 489
           +I
Sbjct: 96  II 97


>SB_20452| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1324

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/67 (22%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
 Frame = +3

Query: 150 PSRTSANSQNLKLQLNYPRTLN----SHCFYLNIKKWQMTSWRSHGCTRERITRFAIDMR 317
           P R SA   + ++ + +P+ L+    SH  ++N  + ++ +WR +G   +  T+ +    
Sbjct: 469 PMRESALIGSKEIDVIFPKELDHIRESHTLFMNELEDRIQNWRQYGIVGDIFTKLSSSYH 528

Query: 318 LCTSKPE 338
           + T+K +
Sbjct: 529 VSTNKQQ 535


>SB_17059| Best HMM Match : 7tm_1 (HMM E-Value=2.9e-34)
          Length = 333

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/71 (23%), Positives = 33/71 (46%)
 Frame = +1

Query: 277 VPENELQDLLSTCAFARVNLNPQLFNYCYSVALMHRRDTRKVRVKNFAEVFPSKFLDSQV 456
           +P   +  L   CAF  V +   + ++CY + + H   + + R+ + +     + L SQ 
Sbjct: 157 IPPTSMTSLWIACAFITVVIPLTIISFCY-LRMCHLASSHRRRITSESSATCREILHSQR 215

Query: 457 FTQARETAAVI 489
             +A  TA +I
Sbjct: 216 NNKAMWTAGLI 226



 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 488 FHQMFHATYYHSTRLHCDGLRRRTPPCVLARRYRHQPA 601
           F   F   +  STRLH DG+R  T     + R  H+ A
Sbjct: 285 FRSAFKTIFGMSTRLHNDGIRNSTERQTQSPREEHKTA 322


>SB_57310| Best HMM Match : rve (HMM E-Value=2.5e-25)
          Length = 440

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 256 LLGVLMDVPENELQDLLSTCAFARVNLNPQLFNYCYSVALMHRRDTRKV 402
           LL +L  +PEN+          + V  NP+L  Y  +V L  ++  RK+
Sbjct: 384 LLAMLRTLPENQKSKCADMGRSSEVESNPKLPKYKATVRLQEQQSRRKI 432


>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
          Length = 2748

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +2

Query: 50  SVFQLTEQFLTEDYANNGIELNNRFGDDASEKIPLKNL-SKLPEFKIATQLPKDAEFSLF 226
           S +Q+T QF++ +Y N    L   FGDD  +   +++L +   E  +   +    E+  F
Sbjct: 126 SAYQITVQFISSNYGNFNQRLVFDFGDDDGKAKIVRHLGASRAEHPLPPNMKSTIEYGAF 185


>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
          Length = 2128

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +2

Query: 5   DRPNEPLITPKGENNSVFQLTEQFLTEDYANNGIELNNRFGDDASEKIPLKNLSKLPEFK 184
           D+P+  +  P+G    +     QF T DY    +  + +  D ++  IPL   ++  E K
Sbjct: 298 DKPSTVVPLPQGAEVKLQDKRRQFETLDYKAQRLHSSGKSFDSSANSIPLSTSTRRAESK 357


>SB_40539| Best HMM Match : DUF1613 (HMM E-Value=2.1)
          Length = 235

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 219 HCFYLNIKKWQMTSWRSHGCTRERITRFAIDMRLCTSKPEPSV 347
           HC +L I K  +T W+  G   ++  R  + +R+    P P +
Sbjct: 84  HCLFLGIAKHCLTLWKQEGLLSDKDFRL-LQIRVDAVVPPPEI 125


>SB_32110| Best HMM Match : PEGSRP (HMM E-Value=9.6)
          Length = 160

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 22/68 (32%), Positives = 28/68 (41%)
 Frame = +2

Query: 515 YHSTRLHCDGLRRRTPPCVLARRYRHQPASLSLAFGLPVYGQRSFNRS*GPSWGVVLLYA 694
           YHS  L    L   +PP  L+R Y   P SLS  +  P        RS  P   +  LY+
Sbjct: 5   YHSPPLSLSRLYS-SPPLSLSRLYSSPPLSLSGLYHSPPLSLSGLYRS--PPLSLSRLYS 61

Query: 695 PASDSPLQ 718
                PL+
Sbjct: 62  SPPGDPLE 69


>SB_18164| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
          Length = 854

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 219 HCFYLNIKKWQMTSWRSHGCTRERITRFAIDMRLCTSKPEPSV 347
           HC +L I K  +T W+  G   ++  R  + +R+    P P +
Sbjct: 65  HCLFLGIAKHCLTLWKQEGLLSDKDFRL-LQIRVDAVVPPPEI 106


>SB_13514| Best HMM Match : DUF1613 (HMM E-Value=9.5)
          Length = 207

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 219 HCFYLNIKKWQMTSWRSHGCTRERITRFAIDMRLCTSKPEPSV 347
           HC +L I K  +T W+  G   ++  R  + +R+    P P +
Sbjct: 84  HCLFLGIAKHCLTLWKQEGLLSDKDFRL-LQIRVDAVVPPPEI 125


>SB_58810| Best HMM Match : DUF1613 (HMM E-Value=1.8)
          Length = 989

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 219 HCFYLNIKKWQMTSWRSHGCTRERITRFAIDMRLCTSKPEPSV 347
           HC +L I K  +T W+  G   ++  R  + +R+    P P +
Sbjct: 126 HCLFLGIAKHCLTLWKQEGLLSDKDFRL-LQIRVDAVVPPPEI 167


>SB_57933| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 254

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 219 HCFYLNIKKWQMTSWRSHGCTRERITRFAIDMRLCTSKPEPSV 347
           HC +L I K  +T W+  G   ++  R  + +R+    P P +
Sbjct: 2   HCLFLGIAKHCLTLWKQEGLLSDKDFRL-LQIRVDAVVPPPEI 43


>SB_54334| Best HMM Match : DUF1613 (HMM E-Value=9.5)
          Length = 206

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 219 HCFYLNIKKWQMTSWRSHGCTRERITRFAIDMRLCTSKPEPSV 347
           HC +L I K  +T W+  G   ++  R  + +R+    P P +
Sbjct: 83  HCLFLGIAKHCLTLWKQEGLLSDKDFRL-LQIRVDAVVPPPEI 124


>SB_49623| Best HMM Match : DUF1613 (HMM E-Value=2.1)
          Length = 680

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 219 HCFYLNIKKWQMTSWRSHGCTRERITRFAIDMRLCTSKPEPSV 347
           HC +L I K  +T W+  G   ++  R  + +R+    P P +
Sbjct: 42  HCLFLGIAKHCLTLWKQEGLLSDKDFRL-LQIRVDAVVPPPEI 83


>SB_26336| Best HMM Match : Dickkopf_N (HMM E-Value=4.2)
          Length = 533

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 219 HCFYLNIKKWQMTSWRSHGCTRERITRFAIDMRLCTSKPEPSV 347
           HC +L I K  +T W+  G   ++  R  + +R+    P P +
Sbjct: 173 HCLFLGIAKHCLTLWKQEGLLSDKDFRL-LQIRVDAVVPPPEI 214


>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3112

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 165  ANSQNLKLQLNYPRTLNSHCFYLNIKKWQMTSWRSHGC 278
            A     +L L    T++++  YL  K+W   SW + GC
Sbjct: 2762 ATPMTYRLPLKTNVTVDTNSTYLACKRWSSGSWVTTGC 2799


>SB_14163| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = +2

Query: 458 SLRLVKLQPLFHQMFHATYYHSTRLHC---DGLRRRTPPCVLARRYRHQPASLSLA 616
           ++ L+      + +  AT  H+ R+ C   D   RR P C    R++H  A L  A
Sbjct: 90  AVNLIDASNALNALNRATALHNIRVLCPIRDNFCRRRPACYGHLRFKHATADLQAA 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,747,849
Number of Sequences: 59808
Number of extensions: 513004
Number of successful extensions: 1259
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)