Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00459
(766 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.2
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 27 2.9
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 27 3.9
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2... 26 5.1
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 26 5.1
SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces pomb... 26 5.1
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha... 26 6.8
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 25 9.0
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.0
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 9.0
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||... 25 9.0
>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 27.5 bits (58), Expect = 2.2
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Frame = -1
Query: 703 DESVHFNTHLALVREYPGDIALVELRSDED-----THCGATAATGVVHVYSVAEMPVVEV 539
+E VH+NT+ +V E + + EL D D + T T H ++ +P +
Sbjct: 212 EEPVHYNTYDGVVNEPNSSVIIEELDDDYDELNDPMNNNDTPITNSTHSAQMSNLPTHDS 271
Query: 538 SEASVHGPVVEKSS 497
+ + G V S+
Sbjct: 272 MDIDMGGAVPSTST 285
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 502 TSRQRARVRSLHSPQLQAFQLQNKREQHR*QPSHHS 609
T+ Q +++ LH QLQ+ Q Q K+ Q + P S
Sbjct: 249 TAAQLQQLKQLHYRQLQSVQQQQKQHQQKKTPQSGS 284
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 315 HAYIDDVFQKHKESAYVRPYTRSELENPGVQVRSVSVETPG 437
H + V KH E T++ELE +R ++TPG
Sbjct: 56 HMGPEKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPG 96
>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
Byr2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 659
Score = 26.2 bits (55), Expect = 5.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 108 PVWQSNGTSRDSFFNVSSPAFH 43
P++QSNG + S +NV S + H
Sbjct: 326 PLYQSNGNEKSSKYNVFSESAH 347
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 26.2 bits (55), Expect = 5.1
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +1
Query: 229 HDPEHRYLDNLVLSLMRPQRCAIHSSTAGTPTSMTFSR 342
H P H L NL+ M P H S A +PTS + S+
Sbjct: 115 HKPHHSGLKNLLEKAMHPG----HKSNANSPTSESPSK 148
>SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 116
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -2
Query: 723 SPAF-RTVTNLSISIHILRWSENIQGTLRSSNFGVMKIRTVV 601
SP F +T T + IHI ++SE + L + + +RT++
Sbjct: 56 SPLFIKTTTRPTALIHITKYSEALASRLLKGHMTQLSLRTIL 97
>SPCC1020.08 |||wybutosine biosynthesis protein
Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 688
Score = 25.8 bits (54), Expect = 6.8
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +1
Query: 34 IDEMERWRRNVEEAIATGTVRLPNGQTRPL-----DIDTLGNML 150
ID + +W R+V E + GT+ L G T L D++ +G+M+
Sbjct: 236 IDALLQWTRSVAECLKNGTL-LKIGNTDSLSSDVMDVEDMGSMM 278
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 190 SIHNNGHSFTAYMHDPEHRYLDNLV 264
SI+NNG +HD E Y+ L+
Sbjct: 162 SIYNNGKGIPIEIHDKEKIYIPELI 186
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 712 QDSDESVHFNTHLALVREYPGDIALVE 632
+D DE + N L+ +YP DI E
Sbjct: 217 EDEDEDNNNNNRWLLIEQYPSDIVAYE 243
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 25.4 bits (53), Expect = 9.0
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +1
Query: 202 NGHSFTAYMHDPEHRYLDNLVLSLMRPQRCAIHSSTAGTPTSMTFSRSTRNLP 360
N F Y HDP R L + + A S T P+S+T+S S P
Sbjct: 73 NASDFHKYSHDPFQR--------LFKAKGNASFSKTKSFPSSVTYSPSEETFP 117
>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +3
Query: 315 HAYIDDVFQKHKESAYVRPYTRSELENPGV 404
H +D+V ++H+ + P S LE G+
Sbjct: 474 HKMVDEVLERHRHRYEINPAFVSRLEQGGI 503
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,252,428
Number of Sequences: 5004
Number of extensions: 69145
Number of successful extensions: 258
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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