Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00459
(766 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1361 - 32890775-32890837,32891071-32891239,32891285-328914... 29 3.1
04_04_0418 + 25077748-25078101,25079413-25079538,25080683-250815... 29 4.1
02_01_0094 - 667361-668962 29 4.1
02_01_0093 + 655420-657021 29 4.1
03_04_0237 - 19201789-19202421 29 5.4
02_02_0015 + 6109552-6109650,6110006-6110078,6111937-6111998,611... 29 5.4
01_06_1627 + 38742294-38742746,38742831-38743120,38743544-38744027 28 7.1
06_01_0770 - 5756200-5756741,5756790-5757286,5757356-5757782,575... 28 9.4
05_06_0243 - 26639497-26641173 28 9.4
02_04_0445 + 22991394-22992101,22993061-22993252,22993419-22994237 28 9.4
>04_04_1361 -
32890775-32890837,32891071-32891239,32891285-32891402,
32891760-32891861,32891930-32892000,32892315-32892532,
32892653-32893048,32893822-32893937,32894021-32894087
Length = 439
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = -3
Query: 335 NVIDVGVPAVEEWIAHRCGL--ISDNTKLSRYLCSGSCMYAVKLCPLLCIEPYSS 177
N DV +P +EE CG+ D K MY + LCP+ + Y S
Sbjct: 142 NYTDVDIPVIEETKPLICGITEFDDVLKEQELSTKEIAMYGLYLCPIWFVTEYLS 196
>04_04_0418 +
25077748-25078101,25079413-25079538,25080683-25081593,
25081970-25082453
Length = 624
Score = 29.1 bits (62), Expect = 4.1
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Frame = -3
Query: 224 YAVKLCPLLCIEPYSSLF-GEMALDSNMLPSVSMSRGRVCPF--GNLTVPVAIASSTF-- 60
Y LC LCI SS + G AL +NM + +SRG V G + V A+ + TF
Sbjct: 157 YIDNLCIALCIGTNSSAWLGTAALVTNM-RNFPLSRGTVAGLIKGYVAVSAAVYTETFNG 215
Query: 59 LLQRSISSMV 30
+LQ S ++++
Sbjct: 216 MLQNSPTNLL 225
>02_01_0094 - 667361-668962
Length = 533
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +2
Query: 365 ASLHSI*AREPGRASEVRVGGDARRTTEHAEHVLDAQRRELVART-RLLDNGPVYARFTH 541
+SLH + REP A VGG+ + +D++ + A+T RLL + R H
Sbjct: 11 SSLHGVTGREPAFAFSTEVGGEDAAAASKFDLPVDSEHK---AKTIRLLSFANPHMRTFH 67
Query: 542 LNYRHF 559
L++ F
Sbjct: 68 LSWISF 73
>02_01_0093 + 655420-657021
Length = 533
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +2
Query: 365 ASLHSI*AREPGRASEVRVGGDARRTTEHAEHVLDAQRRELVART-RLLDNGPVYARFTH 541
+SLH + REP A VGG+ + +D++ + A+T RLL + R H
Sbjct: 11 SSLHGVTGREPAFAFSTEVGGEDAAAASKFDLPVDSEHK---AKTIRLLSFANPHMRTFH 67
Query: 542 LNYRHF 559
L++ F
Sbjct: 68 LSWISF 73
>03_04_0237 - 19201789-19202421
Length = 210
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -3
Query: 143 LPSVSMSRGRVCPFGNLTVPVAIASSTFLLQRSISSMVTNRLRPHDS 3
LP + M+ G P G++ +PV ST + I + N P+++
Sbjct: 59 LPIIGMTLGHTWPLGHIELPVTFGDSTNFRTKRIDFDMANLNLPYNA 105
>02_02_0015 +
6109552-6109650,6110006-6110078,6111937-6111998,
6112315-6112376,6112463-6112556,6112673-6113227,
6113379-6113870,6113967-6114137,6115713-6115817,
6115903-6116052,6116372-6116498,6116585-6116648,
6117147-6117203,6117423-6117555,6117660-6117746
Length = 776
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = -1
Query: 568 SVAEMPVVEVSEASVHGPVVEKSSPRDKFTSLSIQNVFSVFGCPPGVS 425
S +E P S A V+ S P D +S+ Q+ S FG PPGVS
Sbjct: 430 SFSETPSAPNSSA-FPASVMPTSVPNDGGSSMMGQSHSSFFGAPPGVS 476
>01_06_1627 + 38742294-38742746,38742831-38743120,38743544-38744027
Length = 408
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 387 LENPGVQVRSVSVETPGGQPNT 452
L++ GV VR V+VE P PNT
Sbjct: 179 LQSRGVTVRRVTVEAPADSPNT 200
>06_01_0770 -
5756200-5756741,5756790-5757286,5757356-5757782,
5757854-5757911
Length = 507
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Frame = +2
Query: 434 RRTTEHAEHVLDAQRRELVARTRLLDNGPVY------ARFTHLNY 550
R EHA+ L Q+ LV LLD+G V+ A+F LN+
Sbjct: 362 RVACEHAKKALSEQQETLVQMDSLLDDGAVFSATLTRAKFEELNH 406
>05_06_0243 - 26639497-26641173
Length = 558
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -2
Query: 429 SPPTRTSLARPGSRAQIECKDARRQIPCASGKRHRCRRASGRRMDR 292
+PP T P + ++ ARR P A+ R R + RR DR
Sbjct: 4 APPPSTHSTAPFATPEVRSVAARRPRPAAASISARLRDVARRRKDR 49
>02_04_0445 + 22991394-22992101,22993061-22993252,22993419-22994237
Length = 572
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 179 SLFGEMALDSNMLPSVSMSRGRVCPFGNLTVPVAIASSTF 60
S EMA ++ P ++MS V F LTVP+A+ S F
Sbjct: 94 SELSEMAKAFHISPRMAMSISVVIAFAALTVPLAMQSVVF 133
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,261,329
Number of Sequences: 37544
Number of extensions: 493123
Number of successful extensions: 1799
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1799
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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