Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00459
         (766 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)             34   0.11 
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)                  33   0.33 
SB_41673| Best HMM Match : Glyco_hydro_38 (HMM E-Value=2.3e-24)        31   1.0  
SB_16347| Best HMM Match : LRR_1 (HMM E-Value=0.37)                    29   4.1  
SB_55645| Best HMM Match : Herpes_UL73 (HMM E-Value=5.2)               29   5.4  
SB_25009| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_10640| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_21960| Best HMM Match : rve (HMM E-Value=4e-23)                     28   7.2  
SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3)            28   7.2  
SB_7045| Best HMM Match : rve (HMM E-Value=3.8e-22)                    28   7.2  
SB_29438| Best HMM Match : TPR_2 (HMM E-Value=3.8e-36)                 28   9.5  

>SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)
          Length = 761

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
 Frame = +1

Query: 298 HSSTAGTPTSMTFSRSTRNLPTCVLTLDLSSRTRACK*GPCRWRRPADNR----TR*TRS 465
           HS       S+   R TR  P   L     SRT++      R R PA +R    TR +RS
Sbjct: 380 HSKHKSEKQSIENGRPTRTQPGGSLNSSSRSRTKSRSRSRIRSRSPARSRSWSHTR-SRS 438

Query: 466 GCSAT*TCRADSTSRQRARVRS-LHSPQLQAFQLQNKRE-QHR*QPSHHSA 612
                   R+ + SR R+R+RS   S +L +  L++K+  + R + SH  +
Sbjct: 439 RSHTRSRSRSHTRSRSRSRIRSRSRSQELDSRTLRSKKSFERRSRASHRES 489


>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
          Length = 662

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +1

Query: 523 VRSLHSPQLQAFQLQNKREQHR*QPSHHSAYLHHSEVRRAQCPLDILGPT 672
           + SLHS  L A Q ++ R QHR + +    + HH    R QC  +I G T
Sbjct: 452 MHSLHSALLSANQDRHPRNQHRREEAQWCTHQHHI---RVQCVGEIFGST 498


>SB_41673| Best HMM Match : Glyco_hydro_38 (HMM E-Value=2.3e-24)
          Length = 687

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 15/64 (23%), Positives = 31/64 (48%)
 Frame = +3

Query: 324 IDDVFQKHKESAYVRPYTRSELENPGVQVRSVSVETPGGQPNTLNTFWMLSDVNLSRGLD 503
           +  V   H   + V  YTR  L+ P  +  ++ ++ PG +  T+N   + ++ + + G+ 
Sbjct: 403 LGSVSDAHNRPSRVTAYTRDTLDKPTSEHFNIELQAPGSEVLTMNNHLISAEFDSTTGML 462

Query: 504 FSTT 515
            S T
Sbjct: 463 KSIT 466


>SB_16347| Best HMM Match : LRR_1 (HMM E-Value=0.37)
          Length = 320

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = -3

Query: 170 GEMALDSNMLPSVSMSRGRVCPFGNLTVPVAIASSTFLLQRSISS 36
           GEM   +  + S+ +S GR+  FG   + + +A +T + Q SI++
Sbjct: 74  GEMLRHNTTVTSLFLSGGRLGDFGARGIAIGLAQNTTIAQLSIAN 118


>SB_55645| Best HMM Match : Herpes_UL73 (HMM E-Value=5.2)
          Length = 148

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 24/84 (28%), Positives = 35/84 (41%)
 Frame = +1

Query: 259 LVLSLMRPQRCAIHSSTAGTPTSMTFSRSTRNLPTCVLTLDLSSRTRACK*GPCRWRRPA 438
           L L L+R      HS+ +    S +   STR  P  V+T  + S  R       R+  P 
Sbjct: 17  LKLRLLRSSTLTFHSTKSTNQRSCSVPASTRGFPAHVVTNIMLSSVRGLLIFLLRYSSPN 76

Query: 439 DNRTR*TRSGCSAT*TCRADSTSR 510
            ++T    S   A+  CR +S  R
Sbjct: 77  PSKT----SNFPASRDCRGNSFPR 96


>SB_25009| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 641

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = +2

Query: 56  EETLKKLSRLVPLDCQTGRLGLLTSIRSATCWSPAPSRRTENCTVRYTTTGTVSPR 223
           + T K +S    +   +     LTS  +AT    A +  TE  TV  TTT TV P+
Sbjct: 416 DATTKDVSSTETVSVTSAPTATLTSAPTATVTPTASNAFTETTTVTSTTTITVLPQ 471


>SB_10640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1039

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -3

Query: 266 NTKLSRYLCSGSCMYAVKLCPLLCIEPYSSLFGEMALDSNMLPSVSMSRGRVCP 105
           N   +R  CS     AV+L PLL I  + S F E    ++++ ++++   R+ P
Sbjct: 823 NNNTTRLSCSNKLSVAVQLVPLL-IPLFISFFTEYLAVTSVVTTIALPNSRLRP 875


>SB_21960| Best HMM Match : rve (HMM E-Value=4e-23)
          Length = 1109

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 8/87 (9%)
 Frame = -1

Query: 610 HCGATAATGVVHVYSVAE-------MPVVEVSEASVHGPVVEKSSPRDKFTSL-SIQNVF 455
           HC A   T  VH   + +       + ++E +E  VH      + P  K   L   ++VF
Sbjct: 184 HCTANGITRKVHFQIIKDQRRVCEALKLLEFNEECVHQIEPGPNEPLTKQNVLHDYKDVF 243

Query: 454 SVFGCPPGVSTDTDLTCTPGFSSSDRV 374
           S  G  PG    TD T  P  ++  RV
Sbjct: 244 SGLGRLPGTHIGTDPTVKPKQNNPRRV 270


>SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3)
          Length = 350

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 6/25 (24%)
 Frame = -1

Query: 448 FGCPPGV------STDTDLTCTPGF 392
           +GCPPG       S D+D TC PGF
Sbjct: 277 WGCPPGFWCRKRRSVDSDETCPPGF 301


>SB_7045| Best HMM Match : rve (HMM E-Value=3.8e-22)
          Length = 1213

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 8/87 (9%)
 Frame = -1

Query: 610 HCGATAATGVVHVYSVAE-------MPVVEVSEASVHGPVVEKSSPRDKFTSL-SIQNVF 455
           HC A   T  VH   + +       + ++E +E  VH      + P  K   L   ++VF
Sbjct: 284 HCTANGITRKVHFQIIKDQRRVCEALKLLEFNEECVHQIEPGPNEPLTKQNVLHDYKDVF 343

Query: 454 SVFGCPPGVSTDTDLTCTPGFSSSDRV 374
           S  G  PG    TD T  P  ++  RV
Sbjct: 344 SGLGRLPGTHIGTDPTVKPKQNNPRRV 370


>SB_29438| Best HMM Match : TPR_2 (HMM E-Value=3.8e-36)
          Length = 1021

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 665 DQRKMCIEMDRFVTVLNAGENNIVRQSTES 754
           DQ K+ I++ RFV +LN+G+     + T+S
Sbjct: 206 DQNKVIIKLYRFVLMLNSGDGVAYAECTKS 235


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,761,560
Number of Sequences: 59808
Number of extensions: 582564
Number of successful extensions: 2025
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2020
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)