Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00458
(631 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 98 8e-22
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 52 9e-08
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 49 6e-07
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 47 2e-06
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 44 2e-05
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 42 6e-05
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 41 2e-04
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 40 4e-04
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ... 28 0.97
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 26 3.9
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 25 6.8
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 25 6.8
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 25 6.8
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 25 9.0
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 25 9.0
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 25 9.0
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 98.3 bits (234), Expect = 8e-22
Identities = 49/66 (74%), Positives = 55/66 (83%)
Frame = +1
Query: 58 ISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVL 237
+SLLNPKAE + AQAL VNISAA G+QDV+K+NLGP GT KMLV GAG IK+TKDG VL
Sbjct: 2 LSLLNPKAESIQRAQALQVNISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVL 61
Query: 238 LHEMQI 255
L EMQI
Sbjct: 62 LTEMQI 67
Score = 80.2 bits (189), Expect = 2e-16
Identities = 38/85 (44%), Positives = 57/85 (67%)
Frame = +3
Query: 255 QHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNK 434
Q+PTAS IA+ LL+GELLKQA+++I EGLHP +I++GF++A+N+
Sbjct: 68 QNPTASCIAKAATAQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLAKNE 127
Query: 435 SLEVLESMKISIEIARENLVDVART 509
+L L+S K E+ RE L++VA+T
Sbjct: 128 ALTFLDSFKTDFEVDREVLLNVAKT 152
Score = 50.8 bits (116), Expect = 2e-07
Identities = 22/41 (53%), Positives = 30/41 (73%)
Frame = +2
Query: 509 SLKTKVHPSLADVLTDACVDAVLTIRTPGKPVDLHMVDIME 631
SL TK+ + + L A VDA+LTIR P +P+DLHMV+IM+
Sbjct: 153 SLSTKISSKVVESLAPAVVDAILTIRRPDEPIDLHMVEIMK 193
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 51.6 bits (118), Expect = 9e-08
Identities = 20/48 (41%), Positives = 34/48 (70%)
Frame = +1
Query: 115 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIS 258
NI AAK + DV++T LGP+ +KML+ G + +T DG+ +L E++++
Sbjct: 24 NIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAILREIEVA 71
Score = 29.9 bits (64), Expect = 0.32
Identities = 13/73 (17%), Positives = 29/73 (39%)
Frame = +3
Query: 258 HPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKS 437
HP A + ++L GE+L A + +HP ++ F A +
Sbjct: 72 HPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSFKQALEDA 131
Query: 438 LEVLESMKISIEI 476
L +++ + + + +
Sbjct: 132 LSIIDEITLPVNV 144
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 48.8 bits (111), Expect = 6e-07
Identities = 19/47 (40%), Positives = 32/47 (68%)
Frame = +1
Query: 115 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQI 255
NI AA+ + D ++T+LGPKG KM+ +G G++ +T DG +L + +
Sbjct: 24 NIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSV 70
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 47.2 bits (107), Expect = 2e-06
Identities = 19/51 (37%), Positives = 36/51 (70%)
Frame = +1
Query: 103 ALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQI 255
A+ +I A K + ++++T+LGP+G K+L+S G+I +T DG +L +M++
Sbjct: 35 AVKSHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQMEV 85
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 43.6 bits (98), Expect = 2e-05
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +1
Query: 115 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQI 255
N+ A I +V+K++LGP G KMLV GD+ +T DG +L + +
Sbjct: 26 NVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLLDV 72
Score = 37.5 bits (83), Expect = 0.002
Identities = 18/87 (20%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Frame = +3
Query: 255 QHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNK 434
+HP ++ V++ ELL++A+ + +HP I G+ +A +
Sbjct: 73 EHPAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIRE 132
Query: 435 SLEVL-ESMKISIE-IARENLVDVART 509
+++ + + + S++ + +E+L++VA+T
Sbjct: 133 AVKFMTDVLSCSVDSLGKESLINVAKT 159
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 42.3 bits (95), Expect = 6e-05
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = +1
Query: 106 LAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQI 255
L NI+A +QD ++T LGP G K++V G++ I+ DG ++ + I
Sbjct: 26 LLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDGATIMKLLDI 75
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 40.7 bits (91), Expect = 2e-04
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Frame = +3
Query: 258 HPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKS 437
HP A L+ V+ GELL +A+ I GL P I +G+++A + +
Sbjct: 79 HPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGYEMALSHT 138
Query: 438 LEVLESM---KISIEIARENLVDVART 509
+EVLE + KI + + L+ RT
Sbjct: 139 MEVLEEICADKIETVESEKELIKAIRT 165
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 39.5 bits (88), Expect = 4e-04
Identities = 21/58 (36%), Positives = 38/58 (65%), Gaps = 4/58 (6%)
Frame = +3
Query: 348 ELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKI--SIEIA--RENLVDVART 509
ELL+QA+I ++ +HP++I +G+ IA +++ L + I S + A R +L ++ART
Sbjct: 104 ELLRQAEIMVNAKIHPQVIIDGYRIATKTAIDALRASSIDNSSDPAKFRSDLENIART 161
Score = 37.5 bits (83), Expect = 0.002
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +1
Query: 91 RAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGA-GDIKITKDGNVLLHEMQI 255
R A + A + D++K+ LGPKG K+L S + GDI +T DG +L + +
Sbjct: 17 RGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATILKSIAL 72
>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 509
Score = 28.3 bits (60), Expect = 0.97
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 369 IFISEGLHPRIITEGFDIARNKSLEVLESMKI 464
+F+ E + I EGF IAR K +E LE +K+
Sbjct: 437 VFLLEEIVELCIAEGFLIARAKRVESLERVKV 468
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 26.2 bits (55), Expect = 3.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 148 MKTNLGPKGTMKMLVSGAGDIKITKDG 228
+ LGPKG ++ G KITKDG
Sbjct: 58 VSVTLGPKGRNVLIDQPFGSPKITKDG 84
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -3
Query: 572 PHQRKHQLAHLQGLGGP*F 516
PHQR H A L GGP F
Sbjct: 63 PHQRAHNAAALARSGGPGF 81
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.4 bits (53), Expect = 6.8
Identities = 8/27 (29%), Positives = 19/27 (70%)
Frame = +3
Query: 429 NKSLEVLESMKISIEIARENLVDVART 509
++SL++L+ + ++ ++ VD+ART
Sbjct: 270 SESLDLLDDFNYQVTVSNKSFVDIART 296
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 25.4 bits (53), Expect = 6.8
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = -2
Query: 219 GDLYVPSTRNQHFHRAFRTKVSFHYILNSFSC 124
G + S RN+ FHR F+ ++++ + C
Sbjct: 187 GYAFANSKRNRDFHRIFKVLPPEDHLIDDYGC 218
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 25.0 bits (52), Expect = 9.0
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = -1
Query: 610 QINRFAWSPNGEYRINASIS*HICKAWVDLSFE*VRATSTKFSRAISIEIFIDS 449
QI AWSPNG Y++ S + K W DL + T S +S +I+S
Sbjct: 351 QIVAMAWSPNG-YQLATSSADDTVKIW-DLRKVSLAHTIPAHSSLVSDVRYIES 402
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 168 RTKVSFHYILNSFSCGYIYSKCLCS 94
RT +S+H LN+ Y +C+CS
Sbjct: 211 RTDLSYHKKLNTLFTAYWDLQCMCS 235
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 25.0 bits (52), Expect = 9.0
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Frame = +1
Query: 10 SS*LIETENVLNEMAAISL-----LNPKAEFARAAQALAVNI 120
SS IE E+V+ AA+SL LNPK A + Q ++I
Sbjct: 447 SSSFIEEEHVIWYFAAVSLSLLQLLNPKTRLAGSLQLFCLSI 488
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,346,687
Number of Sequences: 5004
Number of extensions: 41839
Number of successful extensions: 117
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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